Re: [R] Saving R objects
I explicitly did is this way isoforms-as.vector(rownames(mult.comp$estimate)) estimate-as.vector(mult.comp$estimate) lower-as.vector(mult.comp$conf.int[,1]) upper-as.vector(mult.comp$conf.int[,2]) p.val.raw-as.vector(mult.comp$p.value.raw) p.val.bon-as.vector(mult.comp$p.value.bon) p.val.adj-as.vector(mult.comp$p.value.adj) out.data.mat-cbind(isoforms,estimate,lower,upper,p.val.raw,p.val.bon,p.val.adj) write.table(out.data.mat, file=filename.csv, sep=,, qmethod=double, col.name=NA) Thanks ../Murli From: Gabor Grothendieck [mailto:[EMAIL PROTECTED] Sent: Sun 7/23/2006 10:11 PM To: Nair, Murlidharan T Cc: r-help@stat.math.ethz.ch Subject: Re: [R] Saving R objects It depends on what information you want to save and how the program on the other end needs it. For the save version I would at least use ascii = TRUE to get it in a more readable fashion. Look at file.show(mult_test.dat) file.show(mult.out) # but use ascii=TRUE on your save statement. to see what you are getting. Other possibilities are to use R2HTML or XML packages to output to HTML or XML. You might want to handle the various components of Dcirec separately. To see what's inside: unclass(Dcirec) str(Dcirec) dput(Dcirec) and use cat statements to output the components in the format of your choice possibly in conjunction with sprintf. On 7/23/06, Nair, Murlidharan T [EMAIL PROTECTED] wrote: I am trying to find the best way to save the follwoing object I am creating library(multcomp) data(recovery) Dcirec-simint(minutes~blanket, data=recovery, conf.level=0.9, alternative=less) I am probably not doing it the most efficient way I think. Here is what I am doing a-print(Dcirec) write(a,file=mult_test.dat, append=T) or save(Dcirec, file=mult.out) Which is the best way to save it, so that I can access its contents outside the R environment? __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Saving R objects
out.data.mat can be created compactly using with: out.data.mat - with(mult.comp, cbind(estimate, conf.int, p.value.raw = c(p.value.raw), p.value.bon, p.value.adj) ) On 7/24/06, Nair, Murlidharan T [EMAIL PROTECTED] wrote: I explicitly did is this way isoforms-as.vector(rownames(mult.comp$estimate)) estimate-as.vector(mult.comp$estimate) lower-as.vector(mult.comp$conf.int[,1]) upper-as.vector(mult.comp$conf.int[,2]) p.val.raw-as.vector(mult.comp$p.value.raw) p.val.bon-as.vector(mult.comp$p.value.bon) p.val.adj-as.vector(mult.comp$p.value.adj) out.data.mat-cbind(isoforms,estimate,lower,upper,p.val.raw,p.val.bon,p.val.adj) write.table(out.data.mat, file=filename.csv, sep=,, qmethod=double, col.name=NA) Thanks ../Murli From: Gabor Grothendieck [mailto:[EMAIL PROTECTED] Sent: Sun 7/23/2006 10:11 PM To: Nair, Murlidharan T Cc: r-help@stat.math.ethz.ch Subject: Re: [R] Saving R objects It depends on what information you want to save and how the program on the other end needs it. For the save version I would at least use ascii = TRUE to get it in a more readable fashion. Look at file.show(mult_test.dat) file.show(mult.out) # but use ascii=TRUE on your save statement. to see what you are getting. Other possibilities are to use R2HTML or XML packages to output to HTML or XML. You might want to handle the various components of Dcirec separately. To see what's inside: unclass(Dcirec) str(Dcirec) dput(Dcirec) and use cat statements to output the components in the format of your choice possibly in conjunction with sprintf. On 7/23/06, Nair, Murlidharan T [EMAIL PROTECTED] wrote: I am trying to find the best way to save the follwoing object I am creating library(multcomp) data(recovery) Dcirec-simint(minutes~blanket, data=recovery, conf.level=0.9, alternative=less) I am probably not doing it the most efficient way I think. Here is what I am doing a-print(Dcirec) write(a,file=mult_test.dat, append=T) or save(Dcirec, file=mult.out) Which is the best way to save it, so that I can access its contents outside the R environment? __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Saving R objects
I am trying to find the best way to save the follwoing object I am creating library(multcomp) data(recovery) Dcirec-simint(minutes~blanket, data=recovery, conf.level=0.9, alternative=less) I am probably not doing it the most efficient way I think. Here is what I am doing a-print(Dcirec) write(a,file=mult_test.dat, append=T) or save(Dcirec, file=mult.out) Which is the best way to save it, so that I can access its contents outside the R environment? __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Saving R objects
It depends on what information you want to save and how the program on the other end needs it. For the save version I would at least use ascii = TRUE to get it in a more readable fashion. Look at file.show(mult_test.dat) file.show(mult.out) # but use ascii=TRUE on your save statement. to see what you are getting. Other possibilities are to use R2HTML or XML packages to output to HTML or XML. You might want to handle the various components of Dcirec separately. To see what's inside: unclass(Dcirec) str(Dcirec) dput(Dcirec) and use cat statements to output the components in the format of your choice possibly in conjunction with sprintf. On 7/23/06, Nair, Murlidharan T [EMAIL PROTECTED] wrote: I am trying to find the best way to save the follwoing object I am creating library(multcomp) data(recovery) Dcirec-simint(minutes~blanket, data=recovery, conf.level=0.9, alternative=less) I am probably not doing it the most efficient way I think. Here is what I am doing a-print(Dcirec) write(a,file=mult_test.dat, append=T) or save(Dcirec, file=mult.out) Which is the best way to save it, so that I can access its contents outside the R environment? __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
