[R] Error: STRING_ELT() can only be applied to a 'character vector', not a 'builtin'

2006-10-17 Thread Brahm, David
I have a daily job that attaches hundreds of pseudo-packages containing
data as promise objects (DDP's, ref: g.data package), and plots the
results to a multi-page pdf device.  Sometimes it fails.  Under R-2.2.1
it just gave segfaults.  Under R-2.3.1 it gave this error message:

   *** caught segfault ***
  address (nil), cause 'memory not mapped'
  Traceback:
   1: load(system.file(data, paste(i, RData, sep = .), package =
pkg), env)
   2: g.data.load(tm.time, hist.20051012)
   3: g.inorder(93500, tm.time, 16)
  aborting ...
  Segmentation fault

Under R-2.4.0, it now gives this message:

  Error: STRING_ELT() can only be applied to a 'character vector', not a
'builtin'

(which appears to be generated inside main/memory.c).

I'm sorry I can't give a reproducible example, because it seems to
happen randomly, and at different points in the process.  So this is
just a shot in the dark -- does anybody recognize this behavior?  TIA.

-- David Brahm ([EMAIL PROTECTED])

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Re: [R] Error: STRING_ELT() can only be applied to a 'character vector', not a 'builtin'

2006-10-17 Thread Prof Brian Ripley
I suspect you have a protection problem.  The specific message you quote 
indicates that STRING_ELT is being called on an object of inappropriate 
type: but it is quite likely that it is being called on uninitialized 
memory as the intended object has been garbage-collected.  Messages from a 
corrupted R session do not always make sense: see the debugging info in 
`Writing R Extensions' and especially the use of gctorture and valgrind.

Followups to R-devel, please: this looks very like a programming issue.

On Tue, 17 Oct 2006, Brahm, David wrote:

 I have a daily job that attaches hundreds of pseudo-packages containing
 data as promise objects (DDP's, ref: g.data package), and plots the
 results to a multi-page pdf device.  Sometimes it fails.  Under R-2.2.1
 it just gave segfaults.  Under R-2.3.1 it gave this error message:

   *** caught segfault ***
  address (nil), cause 'memory not mapped'
  Traceback:
   1: load(system.file(data, paste(i, RData, sep = .), package =
 pkg), env)
   2: g.data.load(tm.time, hist.20051012)
   3: g.inorder(93500, tm.time, 16)
  aborting ...
  Segmentation fault

 Under R-2.4.0, it now gives this message:

  Error: STRING_ELT() can only be applied to a 'character vector', not a
 'builtin'

 (which appears to be generated inside main/memory.c).

 I'm sorry I can't give a reproducible example, because it seems to
 happen randomly, and at different points in the process.  So this is
 just a shot in the dark -- does anybody recognize this behavior?  TIA.

 -- David Brahm ([EMAIL PROTECTED])

 __
 R-help@stat.math.ethz.ch mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.


-- 
Brian D. Ripley,  [EMAIL PROTECTED]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595

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