[R] help with parsing multiple coxph() results

2006-01-17 Thread Hao Liu
Dear All: I have a question on using coxph for multiple genes: I have written code to loop through all 22283 genes in the Hgu-133A and apply coxph on survival data. However, I don't know how to work with the result for each gene:

Re: [R] help with parsing multiple coxph() results

2006-01-17 Thread Fredrik Lundgren
Sent: Tuesday, January 17, 2006 7:47 PM Subject: [R] help with parsing multiple coxph() results Dear All: I have a question on using coxph for multiple genes: I have written code to loop through all 22283 genes in the Hgu-133A and apply coxph on survival data. However, I don't know how

[R] help with parsing multiple coxph() results

2006-01-17 Thread Hao Liu
Thanks for your reply, but I am not sure if I understand your reply right: are you saying the geneid in your post is a vector of all 22283 genes? I want to do cox fit to each and everyone of the 22283 genes and need a way to summarize it -- to do that, I need to know how to parse the result for

Re: [R] help with parsing multiple coxph() results

2006-01-17 Thread Hao Liu
data structure, like vectors Java or Perl, etc. Best Hao -Original Message- From: Fredrik Lundgren [mailto:[EMAIL PROTECTED] Sent: Tuesday, January 17, 2006 2:26 PM To: Hao Liu Cc: R-help Subject: Re: [R] help with parsing multiple coxph() results Hao, I'm not sure but you have specified