Re: [R] partial R
Dear Pedram,
I think that you're confusing component+residual ("partial-residual") plots
with added-variable ("partial-regression") plots. The latter shows residuals
for Y and a particular X regressed on all the other X's, and the correlation
in an added-variable plot is therefore the partial correlation between a
particular X and Y "controlling for" all the other X's. This is exactly what
the partial.cor() function computes. If I follow correctly what you want,
you just have to square the partial correlations.
Regards,
John
John Fox
Department of Sociology
McMaster University
Hamilton, Ontario
Canada L8S 4M4
905-525-9140x23604
http://socserv.mcmaster.ca/jfox
> -Original Message-
> From: Pedram Rowhani [mailto:[EMAIL PROTECTED]
> Sent: Monday, April 02, 2007 11:06 AM
> To: John Fox; 'Michael Kubovy'
> Cc: r-help@stat.math.ethz.ch
> Subject: RE: [R] partial R
>
> Dear John and Michael,
>
> sorry for the poor explanation of my question.
>
> What I am looking for is the partial R-squares, to estimate
> the proportion of unexplained variation of y that becomes
> explained with the addition of variable x cr.plots does give
> me the plots but I am looking for a way to get the actual
> partial R squares, which would correspond to the R squares of
> those plots
>
> I hope that things are a bit more clear now
>
> I guess I can calculate the SSE's and SSR's of the different
> models myself and then use the formula for partial R square
> but things would be just simpler if there was already a
> function implemented in R
>
> Thanks again
> Pedram
>
> At 16:20 02/04/2007, John Fox wrote:
>
>
> Dear Michael and Pedram,
>
> I'm afraid that Pedram's question is unclear, since the
> subject line refers
> to "partial R" (which might have been intended as
> "partial r," or "partial
> correlation"), while the message itself refers to
> "partial regression
> coefficients."
>
> The latter are simply the coefficients returned by
> lm(); there is a
> partial.cor() function in the Rcmdr package that
> computes partial
> correlations. It's so simple, that I'll just reproduce it here:
>
> partial.cor <-
> function (X, ...)
> {
> R <- cor(X, ...)
> RI <- solve(R)
> D <- 1/sqrt(diag(RI))
> R <- -RI * (D %o% D)
> diag(R) <- 0
> rownames(R) <- colnames(R) <- colnames(X)
> R
> }
>
> cr.plots() in the car package produces partial-residual plots
> ("component+residual plots") but returns neither
> partial correlations nor
> partial-regression coefficients.
>
> Regards,
>John
>
>
> John Fox
> Department of Sociology
> McMaster University
> Hamilton, Ontario
> Canada L8S 4M4
> 905-525-9140x23604
> http://socserv.mcmaster.ca/jfox
> <http://socserv.mcmaster.ca/jfox>
>
>
> > -Original Message-
> > From: [EMAIL PROTECTED]
> > [ mailto:[EMAIL PROTECTED]
> <mailto:[EMAIL PROTECTED]> ] On Behalf Of
> Michael Kubovy
> > Sent: Monday, April 02, 2007 9:16 AM
> > To: Pedram Rowhani
> > Cc: r-help@stat.math.ethz.ch
> > Subject: Re: [R] partial R
> >
> >
> > On Apr 2, 2007, at 5:49 AM, Pedram Rowhani wrote:
> >
> > > i am wondering if there is a command in R that will
> give me the
> > > partial regression coefficients
> >
> > To answer your question, you could have started with
> > RSiteSearch('partial regression')
> >
> > It's then likely that you would figured out that one
> way to proceed is
> > install.packages('car')
> > ?cr.plots
> >
> > (You may have to restart R to get the help on a
> newly-installed
> > package.)
> > _
> > Professor Michael Kubovy
> > University of Virginia
> > Department of Psychology
> > USPS: P.O.Box 400400Charlottesville, VA 22904-4400
> > Parcels:Room 102Gilmer Hall
> > McCormick RoadCharlottesville
Re: [R] partial R
Dear John and Michael,
sorry for the poor explanation of my question.
What I am looking for is the partial R-squares, to estimate the
proportion of unexplained variation of y that becomes explained with
the addition of variable x
cr.plots does give me the plots but I am looking for a way to get the
actual partial R squares, which would correspond to the R squares of
those plots
I hope that things are a bit more clear now
I guess I can calculate the SSE's and SSR's of the different models
myself and then use the formula for partial R square
but things would be just simpler if there was already a function
implemented in R
Thanks again
Pedram
At 16:20 02/04/2007, John Fox wrote:
>Dear Michael and Pedram,
>
>I'm afraid that Pedram's question is unclear, since the subject line refers
>to "partial R" (which might have been intended as "partial r," or "partial
>correlation"), while the message itself refers to "partial regression
>coefficients."
>
>The latter are simply the coefficients returned by lm(); there is a
>partial.cor() function in the Rcmdr package that computes partial
>correlations. It's so simple, that I'll just reproduce it here:
>
>partial.cor <-
>function (X, ...)
>{
> R <- cor(X, ...)
> RI <- solve(R)
> D <- 1/sqrt(diag(RI))
> R <- -RI * (D %o% D)
> diag(R) <- 0
> rownames(R) <- colnames(R) <- colnames(X)
> R
>}
>
>cr.plots() in the car package produces partial-residual plots
>("component+residual plots") but returns neither partial correlations nor
>partial-regression coefficients.
>
>Regards,
> John
>
>
>John Fox
>Department of Sociology
>McMaster University
>Hamilton, Ontario
>Canada L8S 4M4
>905-525-9140x23604
>http://socserv.mcmaster.ca/jfox
>
>
> > -Original Message-
> > From: [EMAIL PROTECTED]
> > [mailto:[EMAIL PROTECTED] On Behalf Of Michael Kubovy
> > Sent: Monday, April 02, 2007 9:16 AM
> > To: Pedram Rowhani
> > Cc: r-help@stat.math.ethz.ch
> > Subject: Re: [R] partial R
> >
> >
> > On Apr 2, 2007, at 5:49 AM, Pedram Rowhani wrote:
> >
> > > i am wondering if there is a command in R that will give me the
> > > partial regression coefficients
> >
> > To answer your question, you could have started with
> > RSiteSearch('partial regression')
> >
> > It's then likely that you would figured out that one way to proceed is
> > install.packages('car')
> > ?cr.plots
> >
> > (You may have to restart R to get the help on a newly-installed
> > package.)
> > _
> > Professor Michael Kubovy
> > University of Virginia
> > Department of Psychology
> > USPS: P.O.Box 400400Charlottesville, VA 22904-4400
> > Parcels:Room 102Gilmer Hall
> > McCormick RoadCharlottesville, VA 22903
> > Office:B011+1-434-982-4729
> > Lab:B019+1-434-982-4751
> > Fax:+1-434-982-4766
> > WWW:http://www.people.virginia.edu/~mk9y/
> >
> > __
> > R-help@stat.math.ethz.ch mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> > http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
Pedram Rowhani Ardekani
University of Louvain
Department of geography
Place Louis Pasteur, 3
1348 Louvain-la-Neuve (Belgium)
tel (+32) 010/47.28.70
fax (+32) 010/47.28.77
e-mail [EMAIL PROTECTED]
http://www.geo.ucl.ac.be/Recherche/Teledetection/index.html
[[alternative HTML version deleted]]
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] partial R
Dear Michael and Pedram,
I'm afraid that Pedram's question is unclear, since the subject line refers
to "partial R" (which might have been intended as "partial r," or "partial
correlation"), while the message itself refers to "partial regression
coefficients."
The latter are simply the coefficients returned by lm(); there is a
partial.cor() function in the Rcmdr package that computes partial
correlations. It's so simple, that I'll just reproduce it here:
partial.cor <-
function (X, ...)
{
R <- cor(X, ...)
RI <- solve(R)
D <- 1/sqrt(diag(RI))
R <- -RI * (D %o% D)
diag(R) <- 0
rownames(R) <- colnames(R) <- colnames(X)
R
}
cr.plots() in the car package produces partial-residual plots
("component+residual plots") but returns neither partial correlations nor
partial-regression coefficients.
Regards,
John
John Fox
Department of Sociology
McMaster University
Hamilton, Ontario
Canada L8S 4M4
905-525-9140x23604
http://socserv.mcmaster.ca/jfox
> -Original Message-
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED] On Behalf Of Michael Kubovy
> Sent: Monday, April 02, 2007 9:16 AM
> To: Pedram Rowhani
> Cc: r-help@stat.math.ethz.ch
> Subject: Re: [R] partial R
>
>
> On Apr 2, 2007, at 5:49 AM, Pedram Rowhani wrote:
>
> > i am wondering if there is a command in R that will give me the
> > partial regression coefficients
>
> To answer your question, you could have started with
> RSiteSearch('partial regression')
>
> It's then likely that you would figured out that one way to proceed is
> install.packages('car')
> ?cr.plots
>
> (You may have to restart R to get the help on a newly-installed
> package.)
> _
> Professor Michael Kubovy
> University of Virginia
> Department of Psychology
> USPS: P.O.Box 400400Charlottesville, VA 22904-4400
> Parcels:Room 102Gilmer Hall
> McCormick RoadCharlottesville, VA 22903
> Office:B011+1-434-982-4729
> Lab:B019+1-434-982-4751
> Fax:+1-434-982-4766
> WWW:http://www.people.virginia.edu/~mk9y/
>
> __
> R-help@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] partial R
On Mon, 2007-04-02 at 09:16 -0400, Michael Kubovy wrote:
> On Apr 2, 2007, at 5:49 AM, Pedram Rowhani wrote:
>
> > i am wondering if there is a command in R that will give me the
> > partial regression coefficients
>
> To answer your question, you could have started with
> RSiteSearch('partial regression')
>
> It's then likely that you would figured out that one way to proceed is
> install.packages('car')
> ?cr.plots
>
> (You may have to restart R to get the help on a newly-installed
> package.)
No, you just missed out the fundamental step of loading the package from
the library:
install.packages('car')
library(car)
?cr.plots
HTH
G
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Gavin Simpson [t] +44 (0)20 7679 0522
ECRC, UCL Geography, [f] +44 (0)20 7679 0565
Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/
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__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] partial R
On Apr 2, 2007, at 5:49 AM, Pedram Rowhani wrote:
> i am wondering if there is a command in R that will give me the
> partial regression coefficients
To answer your question, you could have started with
RSiteSearch('partial regression')
It's then likely that you would figured out that one way to proceed is
install.packages('car')
?cr.plots
(You may have to restart R to get the help on a newly-installed
package.)
_
Professor Michael Kubovy
University of Virginia
Department of Psychology
USPS: P.O.Box 400400Charlottesville, VA 22904-4400
Parcels:Room 102Gilmer Hall
McCormick RoadCharlottesville, VA 22903
Office:B011+1-434-982-4729
Lab:B019+1-434-982-4751
Fax:+1-434-982-4766
WWW:http://www.people.virginia.edu/~mk9y/
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] partial R
Dear all i am new to R and using a simple linear model with 4 independent variables and i am wondering if there is a command in R that will give me the partial regression coefficients thanks Pedram Rowhani Ardekani University of Louvain [[alternative HTML version deleted]] __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
