Re: [R] set linetype with plotCI
Sorry, the plot_linetypes[1] is a debugging leftover. It's plot_linetypes[graph_idx] in my actual code ... And plot_linetypes is just the sequence 1,2,3,4... etc plotCI( x = xvals.f[sorted], y = yvals.f[sorted], xlim = c(xmin, xmax), ylim = c(ymin, ymax), pch = plot_symbols[graph_idx], type = b, lty = plot_linetypes[1], col = plot_colors[graph_idx], barcol = plot_colors[graph_idx], uiw = NA, xlab = , ylab = , add = (plot_cnt 0) ) __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] set linetype with plotCI
You could look at the plotCI function in the plotrix package, which has a separate parameter for setting the linetype of the error bars. (An additional benefit is that it works with R 2.4.0 -- gplots seems not to have been updated, or at least the windows binary hasn't, and still includes a now defunct feature.) On 16/10/06, JeeBee [EMAIL PROTECTED] wrote: Sorry, the plot_linetypes[1] is a debugging leftover. It's plot_linetypes[graph_idx] in my actual code ... And plot_linetypes is just the sequence 1,2,3,4... etc plotCI( x = xvals.f[sorted], y = yvals.f[sorted], xlim = c(xmin, xmax), ylim = c(ymin, ymax), pch = plot_symbols[graph_idx], type = b, lty = plot_linetypes[1], col = plot_colors[graph_idx], barcol = plot_colors[graph_idx], uiw = NA, xlab = , ylab = , add = (plot_cnt 0) ) __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- = David Barron Said Business School University of Oxford Park End Street Oxford OX1 1HP __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] set linetype with plotCI
Thanks, I tried using plotCI in the plotrix library. This, however, gives me the below error. CODE:: cat(x = ); print(xvals.f[sorted]) cat(y = ); print(yvals.f[sorted]) cat(pch = ); print(plot_symbols[graph_idx]) cat(lty = ); print(plot_linetypes[graph_idx]) cat(col = ); print(plot_colors[graph_idx]) print(paste(graph_idx =, graph_idx, and plot_cnt =, plot_cnt)) plotCI( x = xvals.f[sorted], y = yvals.f[sorted], xlim = c(xmin, xmax), ylim = c(ymin, ymax), pch = plot_symbols[graph_idx], type = b, lty = plot_linetypes[graph_idx], col = plot_colors[graph_idx], barcol = plot_colors[graph_idx], uiw = NA, xlab = , ylab = , add = (plot_cnt 0) ) print(plotCI succeeeded...) OUTPUT:: x = [1] 160 160 160 160 160 160 160 160 160 160 320 320 320 320 320 320 320 320 320 [20] 480 480 480 480 480 480 480 480 480 640 640 640 640 640 640 640 640 800 800 [39] 800 800 800 800 800 800 800 960 960 960 960 960 960 960 960 960 y = [1] 0.062263829 0.062263829 0.062263829 0.062263829 0.062263829 0.062263829 [7] 0.062263829 0.062263829 0.062263829 0.062263829 0.029483948 0.029483948 [13] 0.029483948 0.029483948 0.029483948 0.029483948 0.029483948 0.029483948 [19] 0.029483948 0.018035707 0.018035707 0.018035707 0.018035707 0.018035707 [25] 0.018035707 0.018035707 0.018035707 0.018035707 0.009895540 0.009895540 [31] 0.009895540 0.009895540 0.009895540 0.009895540 0.009895540 0.009895540 [37] 0.008534913 0.008534913 0.008534913 0.008534913 0.008534913 0.008534913 [43] 0.008534913 0.008534913 0.008534913 0.007301515 0.007301515 0.007301515 [49] 0.007301515 0.007301515 0.007301515 0.007301515 0.007301515 0.007301515 pch = [1] 0 lty = [1] 1 col = [1] #FF [1] graph_idx = 1 and plot_cnt = 0 Error in plot.default(c(160, 160, 160, 160, 160, 160, 160, 160, 160, 160, : formal argument type matched by multiple actual arguments __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] set linetype with plotCI
Looking at the source code for plotCI, I see that it calls plot with type specified as n when the error bars are not being added to an existing plot, so you cannot use the type argument in a call to plotCI. If you want to add lines as well as points, I think you will have to use lines(x,y,type=b,lty = plot_linetypes[graph_idx]) in addition to plotCI, or amend the plotCI function to your own specifications. On 16/10/06, JeeBee [EMAIL PROTECTED] wrote: Thanks, I tried using plotCI in the plotrix library. This, however, gives me the below error. CODE:: cat(x = ); print(xvals.f[sorted]) cat(y = ); print(yvals.f[sorted]) cat(pch = ); print(plot_symbols[graph_idx]) cat(lty = ); print(plot_linetypes[graph_idx]) cat(col = ); print(plot_colors[graph_idx]) print(paste(graph_idx =, graph_idx, and plot_cnt =, plot_cnt)) plotCI( x = xvals.f[sorted], y = yvals.f[sorted], xlim = c(xmin, xmax), ylim = c(ymin, ymax), pch = plot_symbols[graph_idx], type = b, lty = plot_linetypes[graph_idx], col = plot_colors[graph_idx], barcol = plot_colors[graph_idx], uiw = NA, xlab = , ylab = , add = (plot_cnt 0) ) print(plotCI succeeeded...) OUTPUT:: x = [1] 160 160 160 160 160 160 160 160 160 160 320 320 320 320 320 320 320 320 320 [20] 480 480 480 480 480 480 480 480 480 640 640 640 640 640 640 640 640 800 800 [39] 800 800 800 800 800 800 800 960 960 960 960 960 960 960 960 960 y = [1] 0.062263829 0.062263829 0.062263829 0.062263829 0.062263829 0.062263829 [7] 0.062263829 0.062263829 0.062263829 0.062263829 0.029483948 0.029483948 [13] 0.029483948 0.029483948 0.029483948 0.029483948 0.029483948 0.029483948 [19] 0.029483948 0.018035707 0.018035707 0.018035707 0.018035707 0.018035707 [25] 0.018035707 0.018035707 0.018035707 0.018035707 0.009895540 0.009895540 [31] 0.009895540 0.009895540 0.009895540 0.009895540 0.009895540 0.009895540 [37] 0.008534913 0.008534913 0.008534913 0.008534913 0.008534913 0.008534913 [43] 0.008534913 0.008534913 0.008534913 0.007301515 0.007301515 0.007301515 [49] 0.007301515 0.007301515 0.007301515 0.007301515 0.007301515 0.007301515 pch = [1] 0 lty = [1] 1 col = [1] #FF [1] graph_idx = 1 and plot_cnt = 0 Error in plot.default(c(160, 160, 160, 160, 160, 160, 160, 160, 160, 160, : formal argument type matched by multiple actual arguments __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- = David Barron Said Business School University of Oxford Park End Street Oxford OX1 1HP __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] set linetype with plotCI
Great, why didn't I think of that. Thanks :) If you want to add lines as well as points, I think you will have to use lines(x,y,type=b,lty = plot_linetypes[graph_idx]) in addition to plotCI, __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
