Have you been codify your SNP to numbers (ej. 0, 1, 2) and perform analysis again?
El martes, 8 de julio de 2008, 7:36:00 (UTC-6), Boks, M.P.M. escribió: > > > Dear R-friends, > > I am stuck making an LD plot of a small genotype set: > > An exert of my data (genotypes) > > >tempped.exert > V27/V28 V33/V34 V39/V40 V41/V42 > 1 B/B B/B A/A B/B > 2 B/A B/B A/B B/B > 3 B/B B/B A/A B/B > 4 B/A B/A A/B B/A > 5 B/B B/B A/A B/B > > The command: > >LDheatmap(tempped.exert) > > Gives me the desired LD map of the first two columns only. > > How do I make it to take all 4 SNP's/colomns? > > Your help is highly appreciated, > > Thanks, > > Marco > > ______________________________________________ > r-h...@r-project.org <javascript:> mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
