Re: [R-pkg-devel] CRAN Package error

2017-11-30 Thread Henrik Bengtsson
>> On 30.11.2017 12:52, Andrew Holding wrote: >> [...] I know the new Bioconductor on devel is unstable [...] Does CRAN support packages in the Bioconductor *devel* repository? /Henrik On Thu, Nov 30, 2017 at 2:54 PM, Andrew Holding wrote: > Dear Uwe, > > Just submitted the

Re: [R-pkg-devel] CRAN Package error

2017-11-30 Thread Andrew Holding
Dear Uwe, Just submitted the package again and got the same error. I’ve copied it below for reference. Andy Found the following significant warnings: Warning: namespace 'BiocFileCache' is not available and has been replaced Warning: namespace 'AnnotationFilter' is not available and has

Re: [R-pkg-devel] Errors in the pre-test after submitting the R package

2017-11-30 Thread Tan, Senren
Dear Uwe, Thank you very much for your help. Sorry that I misread your email about the maintainer. @Dirk Thank you for pointing this out.@Ege Best regards, Senren From: Uwe Ligges

Re: [R-pkg-devel] Errors in the pre-test after submitting the R package

2017-11-30 Thread Uwe Ligges
On 30.11.2017 22:46, Tan, Senren wrote: Dear Uwe, |One more question: Which version of fftw do you need for these symbols? The system requirement for fftw is fftw-3.3.4 or above. I have tried to build that on fftw-3.3.4, as well as on fftw-3.3.6. The fftw on winbuilder is rather

Re: [R-pkg-devel] Errors in the pre-test after submitting the R package

2017-11-30 Thread Tan, Senren
Dear Uwe, |One more question: Which version of fftw do you need for these symbols? The system requirement for fftw is fftw-3.3.4 or above. I have tried to build that on fftw-3.3.4, as well as on fftw-3.3.6. Thank you very much. Best regards, Senren

Re: [R-pkg-devel] Errors in the pre-test after submitting the R package

2017-11-30 Thread Tan, Senren
Dear Dirk, Thank you very much for your reply. |That looks like it expanded right. |What I would do now is take one of the working packages, create a local |tarball _and put my name and email into Maintainer_ because that way the |win-builder test log will come back to me. And then submit,

Re: [R-pkg-devel] Errors in the pre-test after submitting the R package

2017-11-30 Thread Uwe Ligges
On 30.11.2017 19:57, Dirk Eddelbuettel wrote: Hi Senren, On 30 November 2017 at 16:49, Tan, Senren wrote: | Thank you very much for your reply. My pleasure. You did well here. | I have been trying to look at the R package fftw developed by Olaf and Uwe over the last few days. And I have

Re: [R-pkg-devel] Errors in the pre-test after submitting the R package

2017-11-30 Thread Dirk Eddelbuettel
Hi Senren, On 30 November 2017 at 16:49, Tan, Senren wrote: | Thank you very much for your reply. My pleasure. You did well here. | I have been trying to look at the R package fftw developed by Olaf and Uwe over the last few days. And I have tried to make use of the configure.ac. file in

Re: [R-pkg-devel] New package submission error (ieee_arithmetic)

2017-11-30 Thread Avraham Adler
On Wed, Nov 29, 2017 at 4:37 PM, Waleed Almutiry wrote: > Hi all, > > I tried to upload my package to CRAN and did not pass the the incoming > checks. This was because the use of ieee_arithmetic module in a fortran > subroutine in the src folder. I built and checked the

Re: [R-pkg-devel] New package submission error (ieee_arithmetic)

2017-11-30 Thread Avraham Adler
On Wed, Nov 29, 2017 at 4:37 PM, Waleed Almutiry wrote: > I tried to upload my package to CRAN and did not pass the the incoming > checks. This was because the use of ieee_arithmetic module in a fortran > subroutine in the src folder. I built and checked the package using

[R-pkg-devel] New package submission error (ieee_arithmetic)

2017-11-30 Thread Waleed Almutiry
Hi all, I tried to upload my package to CRAN and did not pass the the incoming checks. This was because the use of ieee_arithmetic module in a fortran subroutine in the src folder. I built and checked the package using (R CMD build) and (R CMD check) under IOS system and it is working fine

Re: [R-pkg-devel] Errors in the pre-test after submitting the R package

2017-11-30 Thread Tan, Senren
Dear Dirk, Thank you very much for your reply. I have been trying to look at the R package fftw developed by Olaf and Uwe over the last few days. And I have tried to make use of the configure.ac. file in their source package to generate the configure script. I tried R CMD Check on my Mac,

[R-pkg-devel] CRAN Package error

2017-11-30 Thread Andrew Holding
Hi all, I’m trying to upload a new version of my package and it was automatically bounced because of the following warnings: Warning: namespace 'BiocFileCache' is not available and has been replaced Warning: namespace 'AnnotationFilter' is not available and has been replaced Warning: namespace