Re: [R-pkg-devel] Issue with Biostrings-- can't find the base rgb function on r-devel

2019-12-04 Thread Hugh Parsonage
rgb is from package grDevices not package base. On Thu, 5 Dec 2019 at 2:48 pm, Dalgleish, James (NIH/NCI) [V] via R-package-devel wrote: > Question: > > NIPTeR is experiencing new warnings when loading Biostrings. I have the > exact same warnings with my package, CNVScope. > > It seems a little

[R-pkg-devel] Issue with Biostrings-- can't find the base rgb function on r-devel

2019-12-04 Thread Dalgleish, James (NIH/NCI) [V] via R-package-devel
Question: NIPTeR is experiencing new warnings when loading Biostrings. I have the exact same warnings with my package, CNVScope. It seems a little odd that the base function rgb cannot be found. What can cause a base package to not be found? I can't replicate this issue on either of my linux

Re: [R-pkg-devel] Static PDF Vignette

2019-12-04 Thread Iñaki Ucar
On Wed, 4 Dec 2019 at 22:54, Charith Karunarathna wrote: > > Hi, > > I followed these instructions, > (https://www.markvanderloo.eu/yaRb/2019/01/11/add-a-static-pdf-vignette-to-an-r-package/), > to add a pdf (perfectphyloR.pdf) as the vignette of my package > (perfectphyloR). However, I am

Re: [R-pkg-devel] New Package olr 4 NOTES

2019-12-04 Thread Mat Fok via R-package-devel
Hi, Thank you. I am wondering why the log would output .Rproj.user when it was already in the .Rignorefile. Hope the .Rignore file is correct anyways as I have mentioned below. Thanks, Mathew Sent from Yahoo Mail for iPhone On Wednesday, December 4, 2019, 2:11 PM, Duncan Murdoch wrote: On

[R-pkg-devel] Static PDF Vignette

2019-12-04 Thread Charith Karunarathna
Hi, I followed these instructions, (https://www.markvanderloo.eu/yaRb/2019/01/11/add-a-static-pdf-vignette-to-an-r-package/), to add a pdf (perfectphyloR.pdf) as the vignette of my package (perfectphyloR). However, I am getting the following Warning message and NOTE from the win-builder:

Re: [R-pkg-devel] New Package olr 4 NOTES

2019-12-04 Thread Duncan Murdoch
On 04/12/2019 1:02 p.m., Mat Fok via R-package-devel wrote: Hi All, This is the first time I am trying to upload a package. It is fun learning this stuff. Thank you all for kindly looking at the NOTES. This is the log I recevied from CRAN volunteers: 

[R-pkg-devel] New Package olr 4 NOTES

2019-12-04 Thread Mat Fok via R-package-devel
Hi All, This is the first time I am trying to upload a package. It is fun learning this stuff. Thank you all for kindly looking at the NOTES. This is the log I recevied from CRAN volunteers:  https://win-builder.r-project.org/incoming_pretest/olr_1.0.0.2000_20191129_024844/Windows/00check.log (I