Re: [R-pkg-devel] Static PDF Vignette

2019-12-05 Thread Charith Karunarathna
Hi, I am trying to add a PDF file (perfectphyloR.pdf) as the vignette of my R package (perfectphyloR). When I check my package using win-builder, I am getting the following warning message: * checking re-building of vignette outputs ... [2s] WARNING Error in re-building vignettes: ... Warni

Re: [R-pkg-devel] New Package olr 4 NOTES

2019-12-05 Thread Jeff Newmiller
I have not had good luck building packages for final delivery using devtools... use the command line, Luke! On December 5, 2019 7:40:46 AM PST, Mat Fok via R-package-devel wrote: >Hi Max, >Following your comment about, ".Rbuildignore is used by R CMD build to >exclude some files from the bundle

Re: [R-pkg-devel] New Package olr 4 NOTES

2019-12-05 Thread Mat Fok via R-package-devel
Hi Max, Following your comment about, ".Rbuildignore is used by R CMD build to exclude some files from the bundled package. If you created the tar.gz file manually, then .Rbuildignore was, well, ignored. And .Rproj.user would then have been included in the tarball." I assume that if I create the

Re: [R-pkg-devel] New Package olr 4 NOTES

2019-12-05 Thread Mat Fok via R-package-devel
I meant .Rbuildignore. Sent from Yahoo Mail for iPhone On Thursday, December 5, 2019, 3:19 AM, Martin Maechler wrote: > Mat Fok via R-package-devel >    on Wed, 4 Dec 2019 22:25:47 + writes:     > Hi,     > Thank you. I am wondering why the log would output .Rproj.user when it

Re: [R-pkg-devel] Issue with Biostrings-- can't find the base rgb function on r-devel

2019-12-05 Thread Uwe Ligges
That was a bug in Biostrings that has been fixed in the meantime. Best, Uwe Ligges On 05.12.2019 05:19, Hugh Parsonage wrote: rgb is from package grDevices not package base. On Thu, 5 Dec 2019 at 2:48 pm, Dalgleish, James (NIH/NCI) [V] via R-package-devel wrote: Question: NIPTeR is experie

Re: [R-pkg-devel] New Package olr 4 NOTES

2019-12-05 Thread Martin Maechler
> Mat Fok via R-package-devel > on Wed, 4 Dec 2019 22:25:47 + writes: > Hi, > Thank you. I am wondering why the log would output .Rproj.user when it was already in the .Rignorefile. Hope the .Rignore file is correct anyways as I have mentioned below. If you really use .