Re: [R-pkg-devel] WARNING: A complete check needs the 'checkbashisms' script.

2020-08-10 Thread Rodrigo Tobar
Hi Brian, The checkbashisms script is invoked by the R checks automatically: https://github.com/wch/r-source/blob/trunk/src/library/tools/R/check.R#L1216-L1267 Thus there shouldn't be any need for you to invoke it manually in your configure script, even less so to worry about its presence. You

[R-pkg-devel] WARNING: A complete check needs the 'checkbashisms' script.

2020-08-10 Thread brian knaus
Hi R-pkg-devel, My package https://github.com/knausb/vcfR has been archived on CRAN because I was asked by CRAN to address issues that I was unable to address before the deadline I was given. The issue I'm struggling with is that when I use ``` R CMD check --as-cran vcfR_1.12.0.tar.gz ``` I ge

Re: [R-pkg-devel] Package Anchored Links with R-Dev

2020-08-10 Thread Henrik Bengtsson
These recently introduced 'R CMD check' WARNINGs were disabled again in R-devel on July 8, 2020: r78793: https://github.com/wch/r-source/commit/ccd903e47ab42e1c181396256aea56454a2e70c9 r78794: https://github.com/wch/r-source/commit/b70f90ae11dd516c1c954ed15eb5a7c2a304b37f This is because there'

Re: [R-pkg-devel] Package Anchored Links with R-Dev

2020-08-10 Thread John Mount
To all: I'd like to apologize for my negative tone and imprecision in my points. Thanks for the discussion and the effort you put into these systems. > On Aug 9, 2020, at 12:35 PM, Duncan Murdoch wrote: > > On 09/08/2020 3:15 p.m., Ben Bolker wrote: >> On 8/9/20 3:08 PM, Duncan Murdoch wrote: >