Re: [R-pkg-devel] CRAN cannot find libraries on Windows

Hello Hervé, Thanks for confirming what I was thinking. Does anyone know how long it should take for win-builder to use the updated Rhtslib version? I just tried it again today, and it's still using the older version. Cheers, Lucas On Sun, Feb 2, 2020 at 11:34 PM Hervé Pagès wrote: > To me

Re: [R-pkg-devel] CRAN cannot find libraries on Windows

Thanks everyone for your help. It's still giving me the same error on the development win-builder and on AppVeyor. Truncated install logs for both are below. I'm not sure that Rhtslib 1.91.1 (the one with the new changes) is being used on win-builder, which is why I've included the AppVeyor

Re: [R-pkg-devel] CRAN cannot find libraries on Windows

On 27/01/2020 5:48 p.m., Martin Morgan wrote: what are the correct paths? The src/gnuwin32/MkRules.dist file gives the patterns. They are based on environment variables LOCAL_SOFT, R_HOME, etc. Most people should modify that file to MkRules.local when building R; the variables defined

Re: [R-pkg-devel] CRAN cannot find libraries on Windows

what are the correct paths? On 1/27/20, 3:32 PM, "R-package-devel on behalf of Uwe Ligges" wrote: Thanks, one suspicious part from the log below is -LC:/extsoft/lib/i386 which is clearly not in any variable we define on CRAN. Looking close shows that >

Re: [R-pkg-devel] CRAN cannot find libraries on Windows

Thanks, one suspicious part from the log below is -LC:/extsoft/lib/i386 which is clearly not in any variable we define on CRAN. Looking close shows that > Rhtslib::pkgconfig("PKG_LIBS") gives 'D:/RCompile/CRANpkg/lib/4.0/Rhtslib/usrlib/x64/libhts.a' -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl

[R-pkg-devel] CRAN cannot find libraries on Windows

Hello all, My package (source here ) no longer compiles on a standard Windows installation (see truncated install log below). The problem seems to be the libraries required by the Bioconductor package Rhtslib