Re: [R-pkg-devel] Help with the warning : 'BiocInstaller' and 'biocLite()' are deprecated, use the 'BiocManager' CRAN

[Martin Morgan]

From Bioconductor's perspective, this warning is safe to ignore. But only CRAN 
knows whether they do or not.

Note the unusual situation that the check is on the 'devel' branch of R, but 
that the package that signals the warning comes from the branch of Bioconductor 
meant for R-3.5.* -- CRAN apparently uses 3.5.* package binaries (for both CRAN 
& Bioconductor) in R-devel.

Martin Morgan

On 3/6/19, 10:00 AM, "R-package-devel on behalf of Yonghui Dong" 
 
wrote:

Dear all,

I remember somebody has asked a similar question days ago, but the problem 
has not been solved. I am sorry that I ask this question again.

My package can pass the CMD check in my local PC, while when I submit my 
package to CRAN, there is one warning:

>Found the following significant warnings:
Warning: 'BiocInstaller' and 'biocLite()' are deprecated, use the 
'BiocManager' CRAN

One of my R package dependencies is a bioconductor package xcms. It seems 
that packages from Bioconducor cannot be installed now.

More details are given in the directory:


https://win-builder.r-project.org/incoming_pretest/Miso_0.2.1_20190304_095427/Windows/
 


Thanks a lot for your help.

Dong
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[R-pkg-devel] Help with the warning : 'BiocInstaller' and 'biocLite()' are deprecated, use the 'BiocManager' CRAN

[Yonghui Dong]

Dear all,

I remember somebody has asked a similar question days ago, but the problem has 
not been solved. I am sorry that I ask this question again.

My package can pass the CMD check in my local PC, while when I submit my 
package to CRAN, there is one warning:

>Found the following significant warnings:
Warning: 'BiocInstaller' and 'biocLite()' are deprecated, use the 'BiocManager' 
CRAN

One of my R package dependencies is a bioconductor package xcms. It seems that 
packages from Bioconducor cannot be installed now.

More details are given in the directory:

https://win-builder.r-project.org/incoming_pretest/Miso_0.2.1_20190304_095427/Windows/
 


Thanks a lot for your help.

Dong
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