Re: [R-pkg-devel] unexpected CRAN pretest failure
I used that pre-compiled version indeed. I tried the latest version again this morning, it is now at r79645, and still all checks pass cleanly. I also reran the r-hub and winbuilder checks this morning. r-hub is at now at version r79633, the version where I first noted the issue with CRAN/winbuilder and it passes there as well. However the issue is still present on winbuilder (r79643) So still not able to reproduce the issue. Best, Bart-Jan -Original Message- From: Joshua Ulrich Sent: Thursday, December 17, 2020 18:07 To: Rossum, Bart-Jan van Cc: Uwe Ligges ; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] unexpected CRAN pretest failure On Thu, Dec 17, 2020 at 7:25 AM Rossum, Bart-Jan van wrote: > > Dear Uwe, > > Thanks for your reaction. > I installed the latest available R-devel version (2020-12-15 r79633) on my > own windows pc, but even then the checks pas cleanly. > So, unfortunately I'm not able to reproduce the issue. > > To be sure, I also retried on Winbuilder, which has a slightly different > version (r79643), but there the issue is still present. > > Could there be something else I need to do to be able to reproduce this > locally? > I assume you used the pre-compiled version here: https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fbin%2Fwindows%2Fbase%2Frdevel.html&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Ccd5c0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438216965842718%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=JhNcdzrAauc3%2FyB84lVtVD4ySNXD4jEPhys9X2W%2Bb7k%3D&reserved=0 That version probably lags behind the subversion repo for about a day. So you need to build the latest R-devel from the latest source in the subversion repo. It always has the latest version. Rocker and r-hub help make this much easier than setting everything up locally on your machine. That said, it looks like the pre-compiled version is at r79643 now, so you should be able to use it to reproduce the issue. Best, Josh > Regards, > Bart-Jan > > -Original Message- > From: Uwe Ligges > Sent: Thursday, December 17, 2020 13:29 > To: Rossum, Bart-Jan van ; > r-package-devel@r-project.org > Subject: Re: [R-pkg-devel] unexpected CRAN pretest failure > > This is form a change in R-devel. > Use a more recent R-devel to reproduce the issue. > > Best, > Uwe Ligges > > On 14.12.2020 15:02, Rossum, Bart-Jan van wrote: > > Dear community, > > > > When trying to update my CRAN > > (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2FstatgenGxE%2Findex.html&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Ccd5c0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438216965842718%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=Ghvfz1vcqlGLz1mYUg3aITU6hqUqECpJArPe7z1gdFE%3D&reserved=0) > > package in ran into unexpected error on Windows. > > I had tested before submission on R-hub, which went fine, but CRAN > > complained, and this was confirmed on Winbuilder. > > I noticed a slight difference in R-version used on CRAN/Winbuilder and > > R-hub. > > However, the error itself seems to come from an lme4 function. > > I'm quite clueless on how to debug/fix this. > > > > CRAN and Winbuilder: > > R Under development (unstable) (2020-12-13 r79623) > > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwi > > n-builder.r-project.org%2FnK0OMOQ378SI&data=04%7C01%7Cbart-jan.v > > anrossum%40wur.nl%7Ccd5c0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4 > > dc1af88d26430abb18f%7C0%7C0%7C637438216965842718%7CUnknown%7CTWFpbGZ > > sb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0 > > %3D%7C3000&sdata=6gACwrgvakWrWl%2FqJ75sROVGJfA6TFn4iZvQ3usnW9A%3 > > D&reserved=0 > > > > R-hub: > > R Under development (unstable) (2020-11-30 r79529) > > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbu > > ilder.r-hub.io%2Fstatus%2FstatgenGxE_1.0.4.tar.gz-fcc1e205a5fb4fd095 > > 59d301ee3502c9&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Ccd5c > > 0ba9587e4dcf87ce08d8a2ae3c33%7C27d137e5761f4dc1af88d26430abb18f%7C0% > > 7C0%7C637438216965852712%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDA > > iLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=g0d > > kXzaG%2BE03rh5uJc2baxPQYxTbVt3i0mmxCMF9FqI%3D&reserved=0 > > > > Any pointers are appreciated, > > Bart-Jan > > > > __ > > R-package-devel@r-project.org
Re: [R-pkg-devel] unexpected CRAN pretest failure
On Thu, Dec 17, 2020 at 7:25 AM Rossum, Bart-Jan van wrote: > > Dear Uwe, > > Thanks for your reaction. > I installed the latest available R-devel version (2020-12-15 r79633) on my > own windows pc, but even then the checks pas cleanly. > So, unfortunately I'm not able to reproduce the issue. > > To be sure, I also retried on Winbuilder, which has a slightly different > version (r79643), but there the issue is still present. > > Could there be something else I need to do to be able to reproduce this > locally? > I assume you used the pre-compiled version here: https://cran.r-project.org/bin/windows/base/rdevel.html That version probably lags behind the subversion repo for about a day. So you need to build the latest R-devel from the latest source in the subversion repo. It always has the latest version. Rocker and r-hub help make this much easier than setting everything up locally on your machine. That said, it looks like the pre-compiled version is at r79643 now, so you should be able to use it to reproduce the issue. Best, Josh > Regards, > Bart-Jan > > -Original Message- > From: Uwe Ligges > Sent: Thursday, December 17, 2020 13:29 > To: Rossum, Bart-Jan van ; > r-package-devel@r-project.org > Subject: Re: [R-pkg-devel] unexpected CRAN pretest failure > > This is form a change in R-devel. > Use a more recent R-devel to reproduce the issue. > > Best, > Uwe Ligges > > On 14.12.2020 15:02, Rossum, Bart-Jan van wrote: > > Dear community, > > > > When trying to update my CRAN > > (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2FstatgenGxE%2Findex.html&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=XsyDDtwJk%2FXlDxxWxx2ylcx9RX%2BVOb9XWSZruwo42HY%3D&reserved=0) > > package in ran into unexpected error on Windows. > > I had tested before submission on R-hub, which went fine, but CRAN > > complained, and this was confirmed on Winbuilder. > > I noticed a slight difference in R-version used on CRAN/Winbuilder and > > R-hub. > > However, the error itself seems to come from an lme4 function. > > I'm quite clueless on how to debug/fix this. > > > > CRAN and Winbuilder: > > R Under development (unstable) (2020-12-13 r79623) > > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwin-builder.r-project.org%2FnK0OMOQ378SI&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=WpzlD%2B7%2BsggCPKJUrjvV4ZchNF12tXAXfrVMjRlh10c%3D&reserved=0 > > > > R-hub: > > R Under development (unstable) (2020-11-30 r79529) > > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbuilder.r-hub.io%2Fstatus%2FstatgenGxE_1.0.4.tar.gz-fcc1e205a5fb4fd09559d301ee3502c9&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=aWev8qrAGU5yO%2FP%2FGqqb3EVqdYYkGq%2FYrUf0b2ZqrDw%3D&reserved=0 > > > > Any pointers are appreciated, > > Bart-Jan > > > > __ > > R-package-devel@r-project.org mailing list > > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-package-devel&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=VA%2BpMcbmLDsLsjeZj5ucESwPHfgylxG59HHYkr9MOiw%3D&reserved=0 > > > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Joshua Ulrich | about.me/joshuaulrich FOSS Trading | www.fosstrading.com __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] unexpected CRAN pretest failure
Dear Uwe, Thanks for your reaction. I installed the latest available R-devel version (2020-12-15 r79633) on my own windows pc, but even then the checks pas cleanly. So, unfortunately I'm not able to reproduce the issue. To be sure, I also retried on Winbuilder, which has a slightly different version (r79643), but there the issue is still present. Could there be something else I need to do to be able to reproduce this locally? Regards, Bart-Jan -Original Message- From: Uwe Ligges Sent: Thursday, December 17, 2020 13:29 To: Rossum, Bart-Jan van ; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] unexpected CRAN pretest failure This is form a change in R-devel. Use a more recent R-devel to reproduce the issue. Best, Uwe Ligges On 14.12.2020 15:02, Rossum, Bart-Jan van wrote: > Dear community, > > When trying to update my CRAN > (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2FstatgenGxE%2Findex.html&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=XsyDDtwJk%2FXlDxxWxx2ylcx9RX%2BVOb9XWSZruwo42HY%3D&reserved=0) > package in ran into unexpected error on Windows. > I had tested before submission on R-hub, which went fine, but CRAN > complained, and this was confirmed on Winbuilder. > I noticed a slight difference in R-version used on CRAN/Winbuilder and R-hub. > However, the error itself seems to come from an lme4 function. > I'm quite clueless on how to debug/fix this. > > CRAN and Winbuilder: > R Under development (unstable) (2020-12-13 r79623) > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwin-builder.r-project.org%2FnK0OMOQ378SI&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=WpzlD%2B7%2BsggCPKJUrjvV4ZchNF12tXAXfrVMjRlh10c%3D&reserved=0 > > R-hub: > R Under development (unstable) (2020-11-30 r79529) > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbuilder.r-hub.io%2Fstatus%2FstatgenGxE_1.0.4.tar.gz-fcc1e205a5fb4fd09559d301ee3502c9&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=aWev8qrAGU5yO%2FP%2FGqqb3EVqdYYkGq%2FYrUf0b2ZqrDw%3D&reserved=0 > > Any pointers are appreciated, > Bart-Jan > > __ > R-package-devel@r-project.org mailing list > https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-package-devel&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C7cee644adb0a4aebb06008d8a28746e3%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637438049192516675%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=VA%2BpMcbmLDsLsjeZj5ucESwPHfgylxG59HHYkr9MOiw%3D&reserved=0 > __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] unexpected CRAN pretest failure
This is form a change in R-devel. Use a more recent R-devel to reproduce the issue. Best, Uwe Ligges On 14.12.2020 15:02, Rossum, Bart-Jan van wrote: Dear community, When trying to update my CRAN (https://cran.r-project.org/web/packages/statgenGxE/index.html) package in ran into unexpected error on Windows. I had tested before submission on R-hub, which went fine, but CRAN complained, and this was confirmed on Winbuilder. I noticed a slight difference in R-version used on CRAN/Winbuilder and R-hub. However, the error itself seems to come from an lme4 function. I'm quite clueless on how to debug/fix this. CRAN and Winbuilder: R Under development (unstable) (2020-12-13 r79623) https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwin-builder.r-project.org%2FnK0OMOQ378SI&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C0bf8357a13b84c807ad708d8a0308e40%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637435477692513415%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=HqExR7SELQ7U32H67xF3ufPKxyTZm3162ZiGb6YetI8%3D&reserved=0 R-hub: R Under development (unstable) (2020-11-30 r79529) https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbuilder.r-hub.io%2Fstatus%2FstatgenGxE_1.0.4.tar.gz-fcc1e205a5fb4fd09559d301ee3502c9&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Cce0d271db460494b5a6908d8a0248bc0%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637435426112472834%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=j2RrXotL3qz5r1O6gcfXxb1VH8WuM2UaWaYQ5SnQFz0%3D&reserved=0 Any pointers are appreciated, Bart-Jan __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] unexpected CRAN pretest failure
Dear community, When trying to update my CRAN (https://cran.r-project.org/web/packages/statgenGxE/index.html) package in ran into unexpected error on Windows. I had tested before submission on R-hub, which went fine, but CRAN complained, and this was confirmed on Winbuilder. I noticed a slight difference in R-version used on CRAN/Winbuilder and R-hub. However, the error itself seems to come from an lme4 function. I'm quite clueless on how to debug/fix this. CRAN and Winbuilder: R Under development (unstable) (2020-12-13 r79623) https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwin-builder.r-project.org%2FnK0OMOQ378SI&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7C0bf8357a13b84c807ad708d8a0308e40%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637435477692513415%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=HqExR7SELQ7U32H67xF3ufPKxyTZm3162ZiGb6YetI8%3D&reserved=0 R-hub: R Under development (unstable) (2020-11-30 r79529) https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbuilder.r-hub.io%2Fstatus%2FstatgenGxE_1.0.4.tar.gz-fcc1e205a5fb4fd09559d301ee3502c9&data=04%7C01%7Cbart-jan.vanrossum%40wur.nl%7Cce0d271db460494b5a6908d8a0248bc0%7C27d137e5761f4dc1af88d26430abb18f%7C0%7C0%7C637435426112472834%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=j2RrXotL3qz5r1O6gcfXxb1VH8WuM2UaWaYQ5SnQFz0%3D&reserved=0 Any pointers are appreciated, Bart-Jan __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
