Re: [R-pkg-devel] R CMD check not finding my vignettes
Hi guys, Thanks very much for all of your comments. I now have a good sense of what the possibilities are, and I will think about what works best for my package. Cheers, David On 20 April 2017 at 14:42, Duncan Murdoch wrote: > On 20/04/2017 4:57 AM, Brian G. Peterson wrote: > >> David, >> >> I'd suggest creating a vignette for each of HTML and PDF, and including >> a source file that contains the common code. e.g. have a pdf header and >> an html header file, and then include the 'main' Rmd as a child doc from >> each header Rmd. This way R CMD build could build both pdf and html >> versions of the output. >> > > That's another solution. My suggestion would be simpler: just pick one > of PDF or HTML, and give the user instructions to produce the other if > necessary, but don't produce it for them. > > Duncan Murdoch > > > >> Regards, >> >> Brian >> >> On 04/20/2017 03:38 AM, David Hugh-Jones wrote: >> >>> Hi Duncan, >>> >>> Thank you very much for taking the time to look at this. >>> >>> I tried rebuilding the tar file so as to include only the .Rmd files, not >>> the HTML files, in 'vignettes': >>> >>> drwxr-xr-x 0 david staff 0 20 Apr 09:21 huxtable/vignettes/ >>> >>> -rw-r--r-- 0 david staff1633 6 Apr 16:26 >>> huxtable/vignettes/comparison.csv >>> >>> -rw-r--r-- 0 david staff6697 6 Apr 14:44 >>> huxtable/vignettes/design-principles.Rmd >>> >>> -rw-r--r-- 0 david staff5521 6 Apr 14:30 >>> huxtable/vignettes/huxreg.Rmd >>> >>> -rw-r--r-- 0 david staff 20552 6 Apr 16:19 >>> huxtable/vignettes/huxtable.Rmd >>> >>> -rw-r--r-- 0 david staff 22 17 Mar 00:19 >>> huxtable/vignettes/placeins-header.tex >>> >>> >>> But when I run R CMD check, I still get the same warning: >>> >>> * checking package vignettes in ‘inst/doc’ ... WARNING >>> >>> Package vignettes without corresponding PDF/HTML: >>> >>>‘design-principles.Rmd’ >>> >>>‘huxreg.Rmd’ >>> >>>‘huxtable.Rmd’ >>> >>> So, the warning does not seem to be related to the presence of HTML files >>> in vignettes. >>> >>> I also tried manually removing .Rmd files from inst/doc (leaving them >>> only >>> in vignettes) but this still gave the same error. >>> >>> My goal here is that for package-specific reasons, I would like both pdf >>> and HTML versions of my vignettes to be available (I am writing code that >>> prints HTML and LaTeX tables and want my users to have examples of how >>> both >>> output formats work). This is why I build those files manually, and place >>> them in inst/doc. >>> >>> Side comment: at the moment, I feel as if I am running through the >>> combinatorics of including and excluding files from vignettes and >>> inst/doc, >>> without much insight into what I am doing. Would it be fair to say that >>> the >>> current system is not very easy to comprehend? >>> >>> Cheers, >>> >>> David >>> >>> On 19 April 2017 at 21:24, Duncan Murdoch >>> wrote: >>> >>> On 19/04/2017 1:00 PM, David Hugh-Jones wrote: Hi Uwe, > > I'm not sure if you ever got my off-list message with my tarball or > subsequent messages. I can't send a tarball on-list - it gets rejected > as > too large - but here is a dropbox link. If you could confirm receipt, > that > would be extremely helpful! > > https://www.dropbox.com/s/179jrm19kx9o7dz/huxtable_0.2.0.tar.gz?dl=0 > > > Not sure if Uwe has had a chance to look, but I just ran R CMD check on your tarball using the latest version of R-devel. It reported the following problems: * checking CRAN incoming feasibility ... NOTE Maintainer: ‘David Hugh-Jones ’ Found the following (possibly) invalid URLs: URL: http://cran.rstudio.com/web/packages/huxtable/index.html From: README.md CRAN URL not in canonical form Canonical CRAN.R-project.org URLs use https. The URL for your package should be in the form https://CRAN.R-project.org/package=huxtable * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘multirow.rds’ I'm not sure where that file belongs, but not there. * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory newer than all files in 'inst/doc': ‘huxreg.html’, ‘huxtable.html’ Those files shouldn't be in the vignettes directory, they are products of building the vignettes. Only the source should normally be in the vignettes directory. * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ I think this is the warning you were asking about. If I look at just the first of those files, I see that design-principles.Rmd exists in vignettes and is set to produce PDF output (only the first output entry in the YAML counts)
Re: [R-pkg-devel] R CMD check not finding my vignettes
On 20/04/2017 4:57 AM, Brian G. Peterson wrote: David, I'd suggest creating a vignette for each of HTML and PDF, and including a source file that contains the common code. e.g. have a pdf header and an html header file, and then include the 'main' Rmd as a child doc from each header Rmd. This way R CMD build could build both pdf and html versions of the output. That's another solution. My suggestion would be simpler: just pick one of PDF or HTML, and give the user instructions to produce the other if necessary, but don't produce it for them. Duncan Murdoch Regards, Brian On 04/20/2017 03:38 AM, David Hugh-Jones wrote: Hi Duncan, Thank you very much for taking the time to look at this. I tried rebuilding the tar file so as to include only the .Rmd files, not the HTML files, in 'vignettes': drwxr-xr-x 0 david staff 0 20 Apr 09:21 huxtable/vignettes/ -rw-r--r-- 0 david staff1633 6 Apr 16:26 huxtable/vignettes/comparison.csv -rw-r--r-- 0 david staff6697 6 Apr 14:44 huxtable/vignettes/design-principles.Rmd -rw-r--r-- 0 david staff5521 6 Apr 14:30 huxtable/vignettes/huxreg.Rmd -rw-r--r-- 0 david staff 20552 6 Apr 16:19 huxtable/vignettes/huxtable.Rmd -rw-r--r-- 0 david staff 22 17 Mar 00:19 huxtable/vignettes/placeins-header.tex But when I run R CMD check, I still get the same warning: * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ So, the warning does not seem to be related to the presence of HTML files in vignettes. I also tried manually removing .Rmd files from inst/doc (leaving them only in vignettes) but this still gave the same error. My goal here is that for package-specific reasons, I would like both pdf and HTML versions of my vignettes to be available (I am writing code that prints HTML and LaTeX tables and want my users to have examples of how both output formats work). This is why I build those files manually, and place them in inst/doc. Side comment: at the moment, I feel as if I am running through the combinatorics of including and excluding files from vignettes and inst/doc, without much insight into what I am doing. Would it be fair to say that the current system is not very easy to comprehend? Cheers, David On 19 April 2017 at 21:24, Duncan Murdoch wrote: On 19/04/2017 1:00 PM, David Hugh-Jones wrote: Hi Uwe, I'm not sure if you ever got my off-list message with my tarball or subsequent messages. I can't send a tarball on-list - it gets rejected as too large - but here is a dropbox link. If you could confirm receipt, that would be extremely helpful! https://www.dropbox.com/s/179jrm19kx9o7dz/huxtable_0.2.0.tar.gz?dl=0 Not sure if Uwe has had a chance to look, but I just ran R CMD check on your tarball using the latest version of R-devel. It reported the following problems: * checking CRAN incoming feasibility ... NOTE Maintainer: ‘David Hugh-Jones ’ Found the following (possibly) invalid URLs: URL: http://cran.rstudio.com/web/packages/huxtable/index.html From: README.md CRAN URL not in canonical form Canonical CRAN.R-project.org URLs use https. The URL for your package should be in the form https://CRAN.R-project.org/package=huxtable * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘multirow.rds’ I'm not sure where that file belongs, but not there. * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory newer than all files in 'inst/doc': ‘huxreg.html’, ‘huxtable.html’ Those files shouldn't be in the vignettes directory, they are products of building the vignettes. Only the source should normally be in the vignettes directory. * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ I think this is the warning you were asking about. If I look at just the first of those files, I see that design-principles.Rmd exists in vignettes and is set to produce PDF output (only the first output entry in the YAML counts). You also have a .html file in vignettes; it shouldn't be there. In inst/doc, you have source, .html and .pdf versions of that file. The warning isn't very helpful, but I think it is triggered by the fact that you've got the .html file in your vignettes directory. If I remove everything but the source from that directory, and everything from the inst/doc directory, then all the vignette warnings go away. (I haven't traced through the code, but I think the warning may be literally correct. Since you had .html files that looked like vignette outputs but weren't, you have vignettes without *corresponding* HTML. It would have been nicer if it suggested how to fix this, but that vignette code is quite tricky, because any file could be source, and any html, tex or pdf file could be output. At
Re: [R-pkg-devel] R CMD check not finding my vignettes
On 20/04/2017 4:38 AM, David Hugh-Jones wrote: Hi Duncan, Thank you very much for taking the time to look at this. I tried rebuilding the tar file so as to include only the .Rmd files, not the HTML files, in 'vignettes': drwxr-xr-x 0 david staff 0 20 Apr 09:21 huxtable/vignettes/ -rw-r--r-- 0 david staff1633 6 Apr 16:26 huxtable/vignettes/comparison.csv -rw-r--r-- 0 david staff6697 6 Apr 14:44 huxtable/vignettes/design-principles.Rmd -rw-r--r-- 0 david staff5521 6 Apr 14:30 huxtable/vignettes/huxreg.Rmd -rw-r--r-- 0 david staff 20552 6 Apr 16:19 huxtable/vignettes/huxtable.Rmd -rw-r--r-- 0 david staff 22 17 Mar 00:19 huxtable/vignettes/placeins-header.tex But when I run R CMD check, I still get the same warning: * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ So, the warning does not seem to be related to the presence of HTML files in vignettes. I also tried manually removing .Rmd files from inst/doc (leaving them only in vignettes) but this still gave the same error. My goal here is that for package-specific reasons, I would like both pdf and HTML versions of my vignettes to be available (I am writing code that prints HTML and LaTeX tables and want my users to have examples of how both output formats work). This is why I build those files manually, and place them in inst/doc. I suspect this will cause troubles if you give them the same base names as the vignettes. You can rename them in inst/doc (e.g. to HTMLdesign-principles.html) and they'll be included as non-vignette files, but the current setup only allows for one kind of output file. This is unlikely to change soon, because it affects lots of assumptions in the code. Side comment: at the moment, I feel as if I am running through the combinatorics of including and excluding files from vignettes and inst/doc, without much insight into what I am doing. Would it be fair to say that the current system is not very easy to comprehend? No, though I think it's fair to say it's not very flexible. The basic rules are pretty easy: - Don't put vignettes (source or output) in inst/doc/. R CMD build should do that for you. - Don't put vignette outputs in vignettes/, just put the source there. There are ways to bend the rules that some people use (e.g. if running R CMD build takes too long, some people find tricky ways to copy vignette outputs without building them), but those are likely pretty fragile. As you appear to have found. Duncan Murdoch __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
David, I'd suggest creating a vignette for each of HTML and PDF, and including a source file that contains the common code. e.g. have a pdf header and an html header file, and then include the 'main' Rmd as a child doc from each header Rmd. This way R CMD build could build both pdf and html versions of the output. Regards, Brian On 04/20/2017 03:38 AM, David Hugh-Jones wrote: Hi Duncan, Thank you very much for taking the time to look at this. I tried rebuilding the tar file so as to include only the .Rmd files, not the HTML files, in 'vignettes': drwxr-xr-x 0 david staff 0 20 Apr 09:21 huxtable/vignettes/ -rw-r--r-- 0 david staff1633 6 Apr 16:26 huxtable/vignettes/comparison.csv -rw-r--r-- 0 david staff6697 6 Apr 14:44 huxtable/vignettes/design-principles.Rmd -rw-r--r-- 0 david staff5521 6 Apr 14:30 huxtable/vignettes/huxreg.Rmd -rw-r--r-- 0 david staff 20552 6 Apr 16:19 huxtable/vignettes/huxtable.Rmd -rw-r--r-- 0 david staff 22 17 Mar 00:19 huxtable/vignettes/placeins-header.tex But when I run R CMD check, I still get the same warning: * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ So, the warning does not seem to be related to the presence of HTML files in vignettes. I also tried manually removing .Rmd files from inst/doc (leaving them only in vignettes) but this still gave the same error. My goal here is that for package-specific reasons, I would like both pdf and HTML versions of my vignettes to be available (I am writing code that prints HTML and LaTeX tables and want my users to have examples of how both output formats work). This is why I build those files manually, and place them in inst/doc. Side comment: at the moment, I feel as if I am running through the combinatorics of including and excluding files from vignettes and inst/doc, without much insight into what I am doing. Would it be fair to say that the current system is not very easy to comprehend? Cheers, David On 19 April 2017 at 21:24, Duncan Murdoch wrote: On 19/04/2017 1:00 PM, David Hugh-Jones wrote: Hi Uwe, I'm not sure if you ever got my off-list message with my tarball or subsequent messages. I can't send a tarball on-list - it gets rejected as too large - but here is a dropbox link. If you could confirm receipt, that would be extremely helpful! https://www.dropbox.com/s/179jrm19kx9o7dz/huxtable_0.2.0.tar.gz?dl=0 Not sure if Uwe has had a chance to look, but I just ran R CMD check on your tarball using the latest version of R-devel. It reported the following problems: * checking CRAN incoming feasibility ... NOTE Maintainer: ‘David Hugh-Jones ’ Found the following (possibly) invalid URLs: URL: http://cran.rstudio.com/web/packages/huxtable/index.html From: README.md CRAN URL not in canonical form Canonical CRAN.R-project.org URLs use https. The URL for your package should be in the form https://CRAN.R-project.org/package=huxtable * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘multirow.rds’ I'm not sure where that file belongs, but not there. * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory newer than all files in 'inst/doc': ‘huxreg.html’, ‘huxtable.html’ Those files shouldn't be in the vignettes directory, they are products of building the vignettes. Only the source should normally be in the vignettes directory. * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ I think this is the warning you were asking about. If I look at just the first of those files, I see that design-principles.Rmd exists in vignettes and is set to produce PDF output (only the first output entry in the YAML counts). You also have a .html file in vignettes; it shouldn't be there. In inst/doc, you have source, .html and .pdf versions of that file. The warning isn't very helpful, but I think it is triggered by the fact that you've got the .html file in your vignettes directory. If I remove everything but the source from that directory, and everything from the inst/doc directory, then all the vignette warnings go away. (I haven't traced through the code, but I think the warning may be literally correct. Since you had .html files that looked like vignette outputs but weren't, you have vignettes without *corresponding* HTML. It would have been nicer if it suggested how to fix this, but that vignette code is quite tricky, because any file could be source, and any html, tex or pdf file could be output. At some point I may try to clean it up a bit and then maybe the error messages will be less obscure.) Duncan Murdoch [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list
Re: [R-pkg-devel] R CMD check not finding my vignettes
Hi Duncan, Thank you very much for taking the time to look at this. I tried rebuilding the tar file so as to include only the .Rmd files, not the HTML files, in 'vignettes': drwxr-xr-x 0 david staff 0 20 Apr 09:21 huxtable/vignettes/ -rw-r--r-- 0 david staff1633 6 Apr 16:26 huxtable/vignettes/comparison.csv -rw-r--r-- 0 david staff6697 6 Apr 14:44 huxtable/vignettes/design-principles.Rmd -rw-r--r-- 0 david staff5521 6 Apr 14:30 huxtable/vignettes/huxreg.Rmd -rw-r--r-- 0 david staff 20552 6 Apr 16:19 huxtable/vignettes/huxtable.Rmd -rw-r--r-- 0 david staff 22 17 Mar 00:19 huxtable/vignettes/placeins-header.tex But when I run R CMD check, I still get the same warning: * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ So, the warning does not seem to be related to the presence of HTML files in vignettes. I also tried manually removing .Rmd files from inst/doc (leaving them only in vignettes) but this still gave the same error. My goal here is that for package-specific reasons, I would like both pdf and HTML versions of my vignettes to be available (I am writing code that prints HTML and LaTeX tables and want my users to have examples of how both output formats work). This is why I build those files manually, and place them in inst/doc. Side comment: at the moment, I feel as if I am running through the combinatorics of including and excluding files from vignettes and inst/doc, without much insight into what I am doing. Would it be fair to say that the current system is not very easy to comprehend? Cheers, David On 19 April 2017 at 21:24, Duncan Murdoch wrote: > On 19/04/2017 1:00 PM, David Hugh-Jones wrote: > >> Hi Uwe, >> >> I'm not sure if you ever got my off-list message with my tarball or >> subsequent messages. I can't send a tarball on-list - it gets rejected as >> too large - but here is a dropbox link. If you could confirm receipt, that >> would be extremely helpful! >> >> https://www.dropbox.com/s/179jrm19kx9o7dz/huxtable_0.2.0.tar.gz?dl=0 >> >> > Not sure if Uwe has had a chance to look, but I just ran R CMD check on > your tarball using the latest version of R-devel. It reported the > following problems: > > * checking CRAN incoming feasibility ... NOTE > Maintainer: ‘David Hugh-Jones ’ > > Found the following (possibly) invalid URLs: > URL: http://cran.rstudio.com/web/packages/huxtable/index.html > From: README.md > CRAN URL not in canonical form > Canonical CRAN.R-project.org URLs use https. > > The URL for your package should be in the form > > https://CRAN.R-project.org/package=huxtable > > * checking top-level files ... NOTE > Non-standard file/directory found at top level: > ‘multirow.rds’ > > I'm not sure where that file belongs, but not there. > > * checking files in ‘vignettes’ ... WARNING > Files in the 'vignettes' directory newer than all files in 'inst/doc': > ‘huxreg.html’, ‘huxtable.html’ > > Those files shouldn't be in the vignettes directory, they are products of > building the vignettes. Only the source should normally be in the > vignettes directory. > > * checking package vignettes in ‘inst/doc’ ... WARNING > Package vignettes without corresponding PDF/HTML: >‘design-principles.Rmd’ >‘huxreg.Rmd’ >‘huxtable.Rmd’ > > I think this is the warning you were asking about. If I look at just the > first of those files, I see that design-principles.Rmd exists in vignettes > and is set to produce PDF output (only the first output entry in the YAML > counts). You also have a .html file in vignettes; it shouldn't be there. > In inst/doc, you have source, .html and .pdf versions of that file. > > The warning isn't very helpful, but I think it is triggered by the fact > that you've got the .html file in your vignettes directory. If I remove > everything but the source from that directory, and everything from the > inst/doc directory, then all the vignette warnings go away. > > (I haven't traced through the code, but I think the warning may be > literally correct. Since you had .html files that looked like vignette > outputs but weren't, you have vignettes without *corresponding* HTML. It > would have been nicer if it suggested how to fix this, but that vignette > code is quite tricky, because any file could be source, and any html, tex > or pdf file could be output. At some point I may try to clean it up a bit > and then maybe the error messages will be less obscure.) > > Duncan Murdoch > [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
On 19/04/2017 1:00 PM, David Hugh-Jones wrote: Hi Uwe, I'm not sure if you ever got my off-list message with my tarball or subsequent messages. I can't send a tarball on-list - it gets rejected as too large - but here is a dropbox link. If you could confirm receipt, that would be extremely helpful! https://www.dropbox.com/s/179jrm19kx9o7dz/huxtable_0.2.0.tar.gz?dl=0 Not sure if Uwe has had a chance to look, but I just ran R CMD check on your tarball using the latest version of R-devel. It reported the following problems: * checking CRAN incoming feasibility ... NOTE Maintainer: ‘David Hugh-Jones ’ Found the following (possibly) invalid URLs: URL: http://cran.rstudio.com/web/packages/huxtable/index.html From: README.md CRAN URL not in canonical form Canonical CRAN.R-project.org URLs use https. The URL for your package should be in the form https://CRAN.R-project.org/package=huxtable * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘multirow.rds’ I'm not sure where that file belongs, but not there. * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory newer than all files in 'inst/doc': ‘huxreg.html’, ‘huxtable.html’ Those files shouldn't be in the vignettes directory, they are products of building the vignettes. Only the source should normally be in the vignettes directory. * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ I think this is the warning you were asking about. If I look at just the first of those files, I see that design-principles.Rmd exists in vignettes and is set to produce PDF output (only the first output entry in the YAML counts). You also have a .html file in vignettes; it shouldn't be there. In inst/doc, you have source, .html and .pdf versions of that file. The warning isn't very helpful, but I think it is triggered by the fact that you've got the .html file in your vignettes directory. If I remove everything but the source from that directory, and everything from the inst/doc directory, then all the vignette warnings go away. (I haven't traced through the code, but I think the warning may be literally correct. Since you had .html files that looked like vignette outputs but weren't, you have vignettes without *corresponding* HTML. It would have been nicer if it suggested how to fix this, but that vignette code is quite tricky, because any file could be source, and any html, tex or pdf file could be output. At some point I may try to clean it up a bit and then maybe the error messages will be less obscure.) Duncan Murdoch __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
Hi Uwe, I'm not sure if you ever got my off-list message with my tarball or subsequent messages. I can't send a tarball on-list - it gets rejected as too large - but here is a dropbox link. If you could confirm receipt, that would be extremely helpful! https://www.dropbox.com/s/179jrm19kx9o7dz/huxtable_0.2.0.tar.gz?dl=0 Cheers, David Hugh-Jones On 7 April 2017 at 11:20, Uwe Ligges wrote: > Can you send the tarball please, I can take a look, > >> Uwe > >> >> [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
Hi Berry, Good call, and I would have been very embarrassed if so, but no. Actually, if they had been, I guess they would not have appeared in the tarball. Cheers, David On 10 April 2017 at 14:57, Berry Boessenkool wrote: > > The "missing" files or their directory are not by accident listed in > Rbuildignore, right? > > > > > From: R-package-devel on behalf > of Uwe Ligges > Sent: Friday, April 7, 2017 12:20 > To: David Hugh-Jones > Cc: r-package-devel@r-project.org > Subject: Re: [R-pkg-devel] R CMD check not finding my vignettes > > Can you send the tarball please, I can take a look, > Uwe > > > On 07.04.2017 12:09, David Hugh-Jones wrote: > > Hi Uwe, > > > > Indeed yes, but my built tarball has got the files in inst/doc as shown. > > If I then run 'R CMD check' on that tarball, I get the error quoted. Is > > there something happening that I don't understand? > > > > Incidentally, the tarball also has files in the vignettes directory: (a) > > the original .Rmd files and (b) HTML files. My original directory has > > all of Rmd, HTML and PDF files in the vignettes directory, but for some > > reason the PDFs don't get included when the tarball is built. > > > > Cheers, > > David > > > > David > > > > On 7 April 2017 at 07:15, Uwe Ligges > <mailto:lig...@statistik.tu-dortmund.de>> wrote: > > > > I do not know devtools, but the vignette sources should be placed in > > ./vignettes and then R CMD build will put the files into the > > relevant places automatically. > > > > Best, > > Uwe Ligges > > > > > > > > > > > > > > On 07.04.2017 07:55, David Hugh-Jones wrote: > > > > Okay, so this got tumbleweeded... so should I file a bug? > > > > D > > > > On Thu, 6 Apr 2017 at 15:37, David Hugh-Jones > > mailto:davidhughjo...@gmail.com>> > > wrote: > > > > > > Before building my package, I manually place both pdf and > > html versions of > > my vignettes into inst/doc. I then build the package with > > `devtools::check`. > > > > Listing of the resulting tarball: > > > > -rw-r--r-- 0 david staff1692 6 Apr 15:10 > > huxtable/inst/doc/design-principles.R > > > > -rw-r--r-- 0 david staff6697 6 Apr 15:10 > > huxtable/inst/doc/design-principles.Rmd > > > > -rw-r--r-- 0 david staff 899765 6 Apr 15:10 > > huxtable/inst/doc/design-principles.html > > > > -rw-r--r-- 0 david staff 213776 6 Apr 15:10 > > huxtable/inst/doc/design-principles.pdf > > > > -rw-r--r-- 0 david staff3009 6 Apr 15:10 > > huxtable/inst/doc/huxreg.R > > > > -rw-r--r-- 0 david staff5521 6 Apr 15:10 > > huxtable/inst/doc/huxreg.Rmd > > > > -rw-r--r-- 0 david staff 940955 6 Apr 15:10 > > huxtable/inst/doc/huxreg.html > > > > -rw-r--r-- 0 david staff 237771 6 Apr 15:10 > > huxtable/inst/doc/huxreg.pdf > > > > -rw-r--r-- 0 david staff 10473 6 Apr 15:11 > > huxtable/inst/doc/huxtable.R > > > > -rw-r--r-- 0 david staff 20552 6 Apr 15:11 > > huxtable/inst/doc/huxtable.Rmd > > > > -rw-r--r-- 0 david staff 925373 6 Apr 15:11 > > huxtable/inst/doc/huxtable.html > > > > -rw-r--r-- 0 david staff 284978 6 Apr 15:11 > > huxtable/inst/doc/huxtable.pdf > > > > However, R CMD check then complains: > > > > * checking package vignettes in ‘inst/doc’ ... WARNING > > Package vignettes without corresponding PDF/HTML: > >‘design-principles.Rmd’ > >‘huxreg.Rmd’ > >‘huxtable.Rmd’ > > > > What gives? > > > > Cheers, > > David > > > > > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > [[alternative HTML version deleted]] > > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
The "missing" files or their directory are not by accident listed in Rbuildignore, right? From: R-package-devel on behalf of Uwe Ligges Sent: Friday, April 7, 2017 12:20 To: David Hugh-Jones Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] R CMD check not finding my vignettes Can you send the tarball please, I can take a look, Uwe On 07.04.2017 12:09, David Hugh-Jones wrote: > Hi Uwe, > > Indeed yes, but my built tarball has got the files in inst/doc as shown. > If I then run 'R CMD check' on that tarball, I get the error quoted. Is > there something happening that I don't understand? > > Incidentally, the tarball also has files in the vignettes directory: (a) > the original .Rmd files and (b) HTML files. My original directory has > all of Rmd, HTML and PDF files in the vignettes directory, but for some > reason the PDFs don't get included when the tarball is built. > > Cheers, > David > > David > > On 7 April 2017 at 07:15, Uwe Ligges <mailto:lig...@statistik.tu-dortmund.de>> wrote: > > I do not know devtools, but the vignette sources should be placed in > ./vignettes and then R CMD build will put the files into the > relevant places automatically. > > Best, > Uwe Ligges > > > > > > > On 07.04.2017 07:55, David Hugh-Jones wrote: > > Okay, so this got tumbleweeded... so should I file a bug? > > D > > On Thu, 6 Apr 2017 at 15:37, David Hugh-Jones > mailto:davidhughjo...@gmail.com>> > wrote: > > > Before building my package, I manually place both pdf and > html versions of > my vignettes into inst/doc. I then build the package with > `devtools::check`. > > Listing of the resulting tarball: > > -rw-r--r-- 0 david staff1692 6 Apr 15:10 > huxtable/inst/doc/design-principles.R > > -rw-r--r-- 0 david staff6697 6 Apr 15:10 > huxtable/inst/doc/design-principles.Rmd > > -rw-r--r-- 0 david staff 899765 6 Apr 15:10 > huxtable/inst/doc/design-principles.html > > -rw-r--r-- 0 david staff 213776 6 Apr 15:10 > huxtable/inst/doc/design-principles.pdf > > -rw-r--r-- 0 david staff3009 6 Apr 15:10 > huxtable/inst/doc/huxreg.R > > -rw-r--r-- 0 david staff5521 6 Apr 15:10 > huxtable/inst/doc/huxreg.Rmd > > -rw-r--r-- 0 david staff 940955 6 Apr 15:10 > huxtable/inst/doc/huxreg.html > > -rw-r--r-- 0 david staff 237771 6 Apr 15:10 > huxtable/inst/doc/huxreg.pdf > > -rw-r--r-- 0 david staff 10473 6 Apr 15:11 > huxtable/inst/doc/huxtable.R > > -rw-r--r-- 0 david staff 20552 6 Apr 15:11 > huxtable/inst/doc/huxtable.Rmd > > -rw-r--r-- 0 david staff 925373 6 Apr 15:11 > huxtable/inst/doc/huxtable.html > > -rw-r--r-- 0 david staff 284978 6 Apr 15:11 > huxtable/inst/doc/huxtable.pdf > > However, R CMD check then complains: > > * checking package vignettes in �inst/doc� ... WARNING > Package vignettes without corresponding PDF/HTML: >�design-principles.Rmd� >�huxreg.Rmd� >�huxtable.Rmd� > > What gives? > > Cheers, > David > > __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
Can you send the tarball please, I can take a look, Uwe On 07.04.2017 12:09, David Hugh-Jones wrote: Hi Uwe, Indeed yes, but my built tarball has got the files in inst/doc as shown. If I then run 'R CMD check' on that tarball, I get the error quoted. Is there something happening that I don't understand? Incidentally, the tarball also has files in the vignettes directory: (a) the original .Rmd files and (b) HTML files. My original directory has all of Rmd, HTML and PDF files in the vignettes directory, but for some reason the PDFs don't get included when the tarball is built. Cheers, David David On 7 April 2017 at 07:15, Uwe Ligges mailto:lig...@statistik.tu-dortmund.de>> wrote: I do not know devtools, but the vignette sources should be placed in ./vignettes and then R CMD build will put the files into the relevant places automatically. Best, Uwe Ligges On 07.04.2017 07:55, David Hugh-Jones wrote: Okay, so this got tumbleweeded... so should I file a bug? D On Thu, 6 Apr 2017 at 15:37, David Hugh-Jones mailto:davidhughjo...@gmail.com>> wrote: Before building my package, I manually place both pdf and html versions of my vignettes into inst/doc. I then build the package with `devtools::check`. Listing of the resulting tarball: -rw-r--r-- 0 david staff1692 6 Apr 15:10 huxtable/inst/doc/design-principles.R -rw-r--r-- 0 david staff6697 6 Apr 15:10 huxtable/inst/doc/design-principles.Rmd -rw-r--r-- 0 david staff 899765 6 Apr 15:10 huxtable/inst/doc/design-principles.html -rw-r--r-- 0 david staff 213776 6 Apr 15:10 huxtable/inst/doc/design-principles.pdf -rw-r--r-- 0 david staff3009 6 Apr 15:10 huxtable/inst/doc/huxreg.R -rw-r--r-- 0 david staff5521 6 Apr 15:10 huxtable/inst/doc/huxreg.Rmd -rw-r--r-- 0 david staff 940955 6 Apr 15:10 huxtable/inst/doc/huxreg.html -rw-r--r-- 0 david staff 237771 6 Apr 15:10 huxtable/inst/doc/huxreg.pdf -rw-r--r-- 0 david staff 10473 6 Apr 15:11 huxtable/inst/doc/huxtable.R -rw-r--r-- 0 david staff 20552 6 Apr 15:11 huxtable/inst/doc/huxtable.Rmd -rw-r--r-- 0 david staff 925373 6 Apr 15:11 huxtable/inst/doc/huxtable.html -rw-r--r-- 0 david staff 284978 6 Apr 15:11 huxtable/inst/doc/huxtable.pdf However, R CMD check then complains: * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ What gives? Cheers, David __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
Hi Uwe, Indeed yes, but my built tarball has got the files in inst/doc as shown. If I then run 'R CMD check' on that tarball, I get the error quoted. Is there something happening that I don't understand? Incidentally, the tarball also has files in the vignettes directory: (a) the original .Rmd files and (b) HTML files. My original directory has all of Rmd, HTML and PDF files in the vignettes directory, but for some reason the PDFs don't get included when the tarball is built. Cheers, David David On 7 April 2017 at 07:15, Uwe Ligges wrote: > I do not know devtools, but the vignette sources should be placed in > ./vignettes and then R CMD build will put the files into the relevant > places automatically. > > Best, > Uwe Ligges > > > > > > > On 07.04.2017 07:55, David Hugh-Jones wrote: > >> Okay, so this got tumbleweeded... so should I file a bug? >> >> D >> >> On Thu, 6 Apr 2017 at 15:37, David Hugh-Jones >> wrote: >> >> >>> Before building my package, I manually place both pdf and html versions >>> of >>> my vignettes into inst/doc. I then build the package with >>> `devtools::check`. >>> >>> Listing of the resulting tarball: >>> >>> -rw-r--r-- 0 david staff1692 6 Apr 15:10 >>> huxtable/inst/doc/design-principles.R >>> >>> -rw-r--r-- 0 david staff6697 6 Apr 15:10 >>> huxtable/inst/doc/design-principles.Rmd >>> >>> -rw-r--r-- 0 david staff 899765 6 Apr 15:10 >>> huxtable/inst/doc/design-principles.html >>> >>> -rw-r--r-- 0 david staff 213776 6 Apr 15:10 >>> huxtable/inst/doc/design-principles.pdf >>> >>> -rw-r--r-- 0 david staff3009 6 Apr 15:10 >>> huxtable/inst/doc/huxreg.R >>> >>> -rw-r--r-- 0 david staff5521 6 Apr 15:10 >>> huxtable/inst/doc/huxreg.Rmd >>> >>> -rw-r--r-- 0 david staff 940955 6 Apr 15:10 >>> huxtable/inst/doc/huxreg.html >>> >>> -rw-r--r-- 0 david staff 237771 6 Apr 15:10 >>> huxtable/inst/doc/huxreg.pdf >>> >>> -rw-r--r-- 0 david staff 10473 6 Apr 15:11 >>> huxtable/inst/doc/huxtable.R >>> >>> -rw-r--r-- 0 david staff 20552 6 Apr 15:11 >>> huxtable/inst/doc/huxtable.Rmd >>> >>> -rw-r--r-- 0 david staff 925373 6 Apr 15:11 >>> huxtable/inst/doc/huxtable.html >>> >>> -rw-r--r-- 0 david staff 284978 6 Apr 15:11 >>> huxtable/inst/doc/huxtable.pdf >>> >>> However, R CMD check then complains: >>> >>> * checking package vignettes in ‘inst/doc’ ... WARNING >>> Package vignettes without corresponding PDF/HTML: >>>‘design-principles.Rmd’ >>>‘huxreg.Rmd’ >>>‘huxtable.Rmd’ >>> >>> What gives? >>> >>> Cheers, >>> David >>> >>> [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
I do not know devtools, but the vignette sources should be placed in ./vignettes and then R CMD build will put the files into the relevant places automatically. Best, Uwe Ligges On 07.04.2017 07:55, David Hugh-Jones wrote: Okay, so this got tumbleweeded... so should I file a bug? D On Thu, 6 Apr 2017 at 15:37, David Hugh-Jones wrote: Before building my package, I manually place both pdf and html versions of my vignettes into inst/doc. I then build the package with `devtools::check`. Listing of the resulting tarball: -rw-r--r-- 0 david staff1692 6 Apr 15:10 huxtable/inst/doc/design-principles.R -rw-r--r-- 0 david staff6697 6 Apr 15:10 huxtable/inst/doc/design-principles.Rmd -rw-r--r-- 0 david staff 899765 6 Apr 15:10 huxtable/inst/doc/design-principles.html -rw-r--r-- 0 david staff 213776 6 Apr 15:10 huxtable/inst/doc/design-principles.pdf -rw-r--r-- 0 david staff3009 6 Apr 15:10 huxtable/inst/doc/huxreg.R -rw-r--r-- 0 david staff5521 6 Apr 15:10 huxtable/inst/doc/huxreg.Rmd -rw-r--r-- 0 david staff 940955 6 Apr 15:10 huxtable/inst/doc/huxreg.html -rw-r--r-- 0 david staff 237771 6 Apr 15:10 huxtable/inst/doc/huxreg.pdf -rw-r--r-- 0 david staff 10473 6 Apr 15:11 huxtable/inst/doc/huxtable.R -rw-r--r-- 0 david staff 20552 6 Apr 15:11 huxtable/inst/doc/huxtable.Rmd -rw-r--r-- 0 david staff 925373 6 Apr 15:11 huxtable/inst/doc/huxtable.html -rw-r--r-- 0 david staff 284978 6 Apr 15:11 huxtable/inst/doc/huxtable.pdf However, R CMD check then complains: * checking package vignettes in ‘inst/doc’ ... WARNING Package vignettes without corresponding PDF/HTML: ‘design-principles.Rmd’ ‘huxreg.Rmd’ ‘huxtable.Rmd’ What gives? Cheers, David __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD check not finding my vignettes
Okay, so this got tumbleweeded... so should I file a bug? D On Thu, 6 Apr 2017 at 15:37, David Hugh-Jones wrote: > > Before building my package, I manually place both pdf and html versions of > my vignettes into inst/doc. I then build the package with `devtools::check`. > > Listing of the resulting tarball: > > -rw-r--r-- 0 david staff1692 6 Apr 15:10 > huxtable/inst/doc/design-principles.R > > -rw-r--r-- 0 david staff6697 6 Apr 15:10 > huxtable/inst/doc/design-principles.Rmd > > -rw-r--r-- 0 david staff 899765 6 Apr 15:10 > huxtable/inst/doc/design-principles.html > > -rw-r--r-- 0 david staff 213776 6 Apr 15:10 > huxtable/inst/doc/design-principles.pdf > > -rw-r--r-- 0 david staff3009 6 Apr 15:10 huxtable/inst/doc/huxreg.R > > -rw-r--r-- 0 david staff5521 6 Apr 15:10 > huxtable/inst/doc/huxreg.Rmd > > -rw-r--r-- 0 david staff 940955 6 Apr 15:10 > huxtable/inst/doc/huxreg.html > > -rw-r--r-- 0 david staff 237771 6 Apr 15:10 > huxtable/inst/doc/huxreg.pdf > > -rw-r--r-- 0 david staff 10473 6 Apr 15:11 > huxtable/inst/doc/huxtable.R > > -rw-r--r-- 0 david staff 20552 6 Apr 15:11 > huxtable/inst/doc/huxtable.Rmd > > -rw-r--r-- 0 david staff 925373 6 Apr 15:11 > huxtable/inst/doc/huxtable.html > > -rw-r--r-- 0 david staff 284978 6 Apr 15:11 > huxtable/inst/doc/huxtable.pdf > > However, R CMD check then complains: > > * checking package vignettes in ‘inst/doc’ ... WARNING > Package vignettes without corresponding PDF/HTML: >‘design-principles.Rmd’ >‘huxreg.Rmd’ >‘huxtable.Rmd’ > > What gives? > > Cheers, > David > -- Sent from Gmail Mobile [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
