Re: [R-sig-Debian] levelplot

2006-04-18 Thread Dirk Eddelbuettel
On 18 April 2006 at 16:23, [EMAIL PROTECTED] wrote: | | I'm running debian unstable, and have been happy with the packages | that Dirk provides for unstable so far. update.packages() doesn't seem to | update lattice to 0.13. | | It's in a special directory (because it's not compatible with R

Re: [R-sig-Debian] stable backport apt problem (solved)

2006-05-04 Thread Dirk Eddelbuettel
On 4 May 2006 at 13:55, Christian T. Steigies wrote: | Hi Robert, | On Wed, May 03, 2006 at 02:13:17PM -0700, Robert King wrote: | Hi Christian, | | This went mostly OK, but failed with a problem with | /usr/lib/R/library/grid/R/grid (see extract from output below). | This was fixed with

Re: [R-sig-Debian] Query about building R-2.3.1 for Ubuntu

2006-06-09 Thread Dirk Eddelbuettel
On 9 June 2006 at 08:17, Adrian DUSA wrote: | Hello Arin, | | I doubt anyone has built a deb package for the latest release. Wrong. See e.g. one of http://changelogs.debian.net/r-base http://packages.qa.debian.org/r/r-base.html As all previous releases R 2.3.1 was in

Re: [R-sig-Debian] annoying warnings in ESS/Emacs

2006-06-16 Thread Dirk Eddelbuettel
On 15 June 2006 at 14:51, Simon Blomberg wrote: | Hi, | | I'm not sure if this is an R problem, a Debian problem, a GNU Emacs | problem or an ESS problem. I get the following warning the first time I | call help on a command in a session, for example: | | ?sessionInfo | Warning message: |

Re: [R-sig-Debian] annoying warnings in ESS/Emacs

2006-06-28 Thread Dirk Eddelbuettel
On 27 June 2006 at 22:59, Sebastian Luque wrote: | Simon Blomberg [EMAIL PROTECTED] wrote: | | [...] | | This only occurs in GNU Emacs, not when running R from bash, and not | with Xemacs. It started happening when I updated R and a lot of packages | to 2.3.1. I checked the archives and

Re: [R-sig-Debian] Compilation of R packages

2006-07-05 Thread Dirk Eddelbuettel
On 5 July 2006 at 11:53, Vincent Goulet wrote: | Le Mercredi 5 Juillet 2006 09:41, Dirk Eddelbuettel a écrit : | Salut Vincent, | | On 4 July 2006 at 23:27, Vincent Goulet wrote: | | I'm currently following your procedure suggested on R-SIG-Debian | | (https://stat.ethz.ch/pipermail/r-sig

Re: [R-sig-Debian] Compilation of R packages

2006-07-05 Thread Dirk Eddelbuettel
On 5 July 2006 at 22:55, Christian T. Steigies wrote: | On Wed, Jul 05, 2006 at 11:53:42AM -0400, Vincent Goulet wrote: | Le Mercredi 5 Juillet 2006 09:41, Dirk Eddelbuettel a écrit : | Salut Vincent, | | On 4 July 2006 at 23:27, Vincent Goulet wrote: | | I'm currently following your

Re: [R-sig-Debian] Repository entry in sources.list

2006-07-26 Thread Dirk Eddelbuettel
Oscar, On 24 July 2006 at 15:44, [EMAIL PROTECTED] wrote: | I'd like to use APT to install the latest edition of R in my Ubuntu 6.06 OS. What is the entry that goes in the sources.list file? Please spell it to me as clearly as possible. I'm going nuts trying to download and install with APT

Re: [R-sig-Debian] R 2.4 needed for packages in testing _now_?

2006-10-04 Thread Dirk Eddelbuettel
Tyler, On 4 October 2006 at 21:04, Tyler Smith wrote: | Hi, | | I'm running testing, freshly updated, and I've now got a version of MASS | installed that depends on R =2.4. Yup -- my mistake. I updated all (my Debian-maintained) packages from CRAN the day they came out using the 2.4.0

Re: [R-sig-Debian] GUI for R

2006-10-09 Thread Dirk Eddelbuettel
On 9 October 2006 at 14:11, Gregor Gorjanc wrote: | Tyler Smith wrote: | If you are spending any significant time working in R I would highly | recommend emacs with ESS. Both are apt-gettable for stable, testing and [...] | I also agree with Tyler. If you do not know Emacs it might be a bit of

Re: [R-sig-Debian] cannot load MASS in Etch

2006-10-13 Thread Dirk Eddelbuettel
On 13 October 2006 at 11:51, Federico Calboli wrote: | Hi All, | | I hate to do this (because I always found the R/Debian combo exceptional and I | never had the time to ontribute --sorry about that--), BUT, the latest r-cran-vr | for Etch (testing) is | | dpkg -l | grep r-cran-vr | ii

[R-sig-Debian] Poll: Does R_PAPERSIZE in /etc/R/Renviron matter?

2006-10-23 Thread Dirk Eddelbuettel
A heuristic runs via the r-base-core package postinst. It is intended to use the result from Debian's paperconf(1) toool, and to update the R environment variable R_PAPERSIZE accordingly. This apparently broke some time ago when R changed to a dual variable setup, and my regexp didn't notice.

Re: [R-sig-Debian] Poll: Does R_PAPERSIZE in /etc/R/Renviron matter?

2006-10-24 Thread Dirk Eddelbuettel
On 24 October 2006 at 08:18, Sebastian P. Luque wrote: | On Mon, 23 Oct 2006 15:36:02 -0500, | Dirk Eddelbuettel [EMAIL PROTECTED] wrote: | Does anybody use this, or is it ok if I simply disable this in Debian? | In that case we simply do what everybody else does, so you all get to | live

Re: [R-sig-Debian] Lattice package not listed

2006-11-19 Thread Dirk Eddelbuettel
On 19 November 2006 at 17:11, Dirk Eddelbuettel wrote: | | On 19 November 2006 at 16:15, [EMAIL PROTECTED] wrote: | | I do not find the package lattice when I try to install it with install.packages(). Where is it? I gave tried the Austria and USA(PA1) to no avail. | | | | I am using Ubuntu

Re: [R-sig-Debian] Lattice package not listed

2006-11-19 Thread Dirk Eddelbuettel
On 19 November 2006 at 17:46, Dirk Eddelbuettel wrote: | | On 19 November 2006 at 17:11, Dirk Eddelbuettel wrote: | | | | On 19 November 2006 at 16:15, [EMAIL PROTECTED] wrote: | | | I do not find the package lattice when I try to install it with install.packages(). Where is it? I gave tried

Re: [R-sig-Debian] getting the Debian pgp key

2007-03-22 Thread Dirk Eddelbuettel
On 22 March 2007 at 10:02, Johannes Ranke wrote: | * Dirk Eddelbuettel [EMAIL PROTECTED] [070320 03:30]: | | On 19 March 2007 at 15:45, Anne York wrote: | | I've tried to obtain the public key as described in the | | README file in bin/linux/Debian on CRAN. The server | | specified

Re: [R-sig-Debian] tk not installed properly

2007-11-02 Thread Dirk Eddelbuettel
Tyler, On 2 November 2007 at 14:10, Tyler Smith wrote: | Hi, | | I'm getting the following error: | | install.packages() | --- Please select a CRAN mirror for use in this session --- | Loading Tcl/Tk interface ... Error in fun(...) : Can't find a usable tk.tcl in the following directories:

Re: [R-sig-Debian] littler usage

2007-11-24 Thread Dirk Eddelbuettel
On 23 November 2007 at 10:48, Sebastian P. Luque wrote: | Thanks Dirk for feedback on this. | | I'm also trying to take two arguments from stdin and do a simple | computation. I'm looking for something like: | | echo 1 10 | r -e print(pretty(c(as.numeric(argv[1]), as.numeric(argv[2] | |

Re: [R-sig-Debian] R 2.6.1

2007-11-26 Thread Dirk Eddelbuettel
On 26 November 2007 at 15:44, Tyler Smith wrote: | On Mon, Nov 26, 2007 at 01:21:20PM -0600, Dirk Eddelbuettel wrote: | | Debian testing users cannot run the unstable binaries as libc6 is ahead on | unstable. We'll have to wait for libc6, or for Johannes' backports :) | | Any idea when

Re: [R-sig-Debian] FW: Warnings

2007-12-06 Thread Dirk Eddelbuettel
On 6 December 2007 at 14:46, Gorjanc Gregor wrote: | Hmm, | | another one, but error this time! | | li library(Matrix) | Loading required package: lattice | round(1) | Error in .Internal(round(x, digits)) : no internal function round You may be getting caught between partial Ubuntu updates. I

[R-sig-Debian] rJava and JGR, anyone?

2008-01-23 Thread Dirk Eddelbuettel
I have in the past tried to package JGR and the underlying rJava. This worked sometimes rather well (and truth be told, Simon had put a lot of work in) but things with the different Java packages always change in some way, shape or form. Plus, JGR really needs the still-not-really-free Sun Java

Re: [R-sig-Debian] Confused about versions of R and Debian

2008-02-18 Thread Dirk Eddelbuettel
Michael, On 18 February 2008 at 09:49, Michael Dewey wrote: | I have recently acquired an Asus EEE PC which runs a version of | Xandros which I believe to be a fork of Debian. I have been using R | under various versions of Windows for some years but this is my first | move into the world of

Re: [R-sig-Debian] fonts in eps files

2008-03-02 Thread Dirk Eddelbuettel
On 2 March 2008 at 15:51, tyler wrote: | I've got a paper ready for publication, but the .eps files I produced | are giving the editor problems. I received the following complaint: | | I tried to rasterize the eps files you sent, but I got a warning | message that they contain a font

Re: [R-sig-Debian] info files

2008-03-13 Thread Dirk Eddelbuettel
On 13 March 2008 at 15:01, tyler wrote: | I'm a little confused as to how Debian deals with texinfo files. The R | docs are a good example of my problems, so maybe you folks can explain | how this works. | | What I've noticed is that the texinfo files for R get appended/indexed | in

Re: [R-sig-Debian] Filtering R views by platform was: One problem solved and a new one to consider...

2008-05-08 Thread Dirk Eddelbuettel
On 4 May 2008 at 23:07, Brian Lunergan wrote: | Dirk Eddelbuettel wrote: | Looks like that comes from RBloomberg. So it appears that you need to filter | the output of ctv for the Finance taskview to exclude the packages not | available on your architecture. So just remove RBloomberg

Re: [R-sig-Debian] rmpi/snow grabs all available CPU

2008-05-08 Thread Dirk Eddelbuettel
On 8 May 2008 at 11:54, Faheem Mitha wrote: | | Hi, | | I'm testing affyPara on Debian lenny with | | R 2.7 from unstable, and the corresponding bioconductor packages from | bioconductor.org downloaded using biocLite as per usual. | | The command | | cl = makeMPIcluster(k) | | succeeds, but

Re: [R-sig-Debian] optimized linear algebra library on Lenny

2008-05-28 Thread Dirk Eddelbuettel
On Wed, May 28, 2008 at 10:52:45AM -0300, tyler wrote: Hi, I'd like to install the optimized libraries on my Thinkpad with an Intel Core Solo chip, which apparently supports the following instruction sets: MMX, SSE, SSE2, SSE3 instruction sets, XD-Bit. In a recent r-help message, the

Re: [R-sig-Debian] [R] need help for building R in Ubuntu 8.04

2008-05-29 Thread Dirk Eddelbuettel
| complex fudgy stuff.) | | -- Tony Plate | | | Dirk Eddelbuettel wrote: | On Wed, May 28, 2008 at 02:29:10PM +0200, Martin Maechler wrote: | EH == Erin Hodgess [EMAIL PROTECTED] | on Sun, 25 May 2008 13:27:04 -0500 writes: | EH Try: ./configure --with-x=no | | well

Re: [R-sig-Debian] [R] need help for building R in Ubuntu 8.04

2008-05-30 Thread Dirk Eddelbuettel
On Fri, May 30, 2008 at 09:18:34AM +0200, Martin Maechler wrote: Thanks a lot, Doug and Dirk, for 'wajig'. I didn't know it but now plan to use it as well. One thing though (wajig or apt-get or aptitude): apt-get build-dep r-base has a bit a seemingly undesired effect on my

Re: [R-sig-Debian] libRlapack.so ... : No such file or directory

2008-05-30 Thread Dirk Eddelbuettel
On Fri, May 30, 2008 at 11:44:34AM -0300, tyler wrote: Hi, I tried to install a few packages and got hung up when Matrix couldn't be lazy loaded. The actual error follows: library(Matrix) Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to

Re: [R-sig-Debian] Debian/Ubuntu packages of a recent version of ess?

2008-06-13 Thread Dirk Eddelbuettel
On 13 June 2008 at 15:09, Douglas Bates wrote: | Is there a repository from which I can install a recent version of ess | as a Debian/Ubuntu package for amd_64? On the Ubuntu list of packages | the released version of ess for hardy is 5.3.0-1 which seems, well, But you do know that Ubuntu has

Re: [R-sig-Debian] best way to update packages when using Debian packages of R

2008-06-18 Thread Dirk Eddelbuettel
On 18 June 2008 at 12:45, Mark Kimpel wrote: | After some frustrations with installing some R packages from source, | usually related to library dependencies or suspected kernel problems [ Are you really sure 'kernel problems' affect R ? ] | (recent one with Ubuntu and Rmpi) I decided to give

Re: [R-sig-Debian] Problems when installing RODBC in debian etch

2008-06-26 Thread Dirk Eddelbuettel
On 26 June 2008 at 16:20, [EMAIL PROTECTED] wrote: | Hello: | | I am tried to install the RODBC package in debian etch. At the end of the | installation it appears errors: [...] | Somebody knows which is the problem and the solution? Well this has been maintained as a package in Debian for

Re: [R-sig-Debian] Problems when installing RODBC in debian etch

2008-06-26 Thread Dirk Eddelbuettel
On 26 June 2008 at 18:14, [EMAIL PROTECTED] wrote: | Hello: | | I have installed the package without problems with this order: | | $ sudo apt-get install r-cran-rodbc | | but, when I tried to load it using library(RODBC) I get the following error: | |library(RODBC) Error in

Re: [R-sig-Debian] Problems when installing RODBC in debian etch

2008-06-27 Thread Dirk Eddelbuettel
On 27 June 2008 at 08:28, [EMAIL PROTECTED] wrote: | Hi: | | A Divendres 27 Juny 2008 04:14, Dirk Eddelbuettel va escriure: | On 26 June 2008 at 18:14, [EMAIL PROTECTED] wrote: | | but, when I tried to load it using library(RODBC) I get the following | error: | |library(RODBC) Error

Re: [R-sig-Debian] Problems when installing RODBC in debian etch

2008-06-27 Thread Dirk Eddelbuettel
Johannes, On 27 June 2008 at 17:05, Johannes Ranke wrote: | Hi, | | I just added RODBC to the list of packages maintained for the Debian | etch backports on CRAN. The r-cran-rodbc packages are on their way to | CRAN - if you want them now, you can use | | deb

Re: [R-sig-Debian] Problems when installing RODBC in debian etch

2008-06-27 Thread Dirk Eddelbuettel
On 27 June 2008 at 21:46, Johannes Ranke wrote: | * Dirk Eddelbuettel [EMAIL PROTECTED] [080627 19:30]: | | Johannes, | | On 27 June 2008 at 17:05, Johannes Ranke wrote: | | Hi, | | | | I just added RODBC to the list of packages maintained for the Debian | | etch backports on CRAN

[R-sig-Debian] Administrivia

2008-06-28 Thread Dirk Eddelbuettel
I just flushed the list of pending messages, getting rid of the spam and accepting messages from non-subscribers that had been held for appropval. So, no, the list is not broken, I just don't flush the queue all that often. Dirk, wearing his list-admin hat -- Three out of two people have

Re: [R-sig-Debian] R-SIG-Debian Digest, Vol 35, Issue 1

2008-07-06 Thread Dirk Eddelbuettel
On 6 July 2008 at 10:38, COREY SPARKS wrote: | R won't appear under the applications. Go to the terminal (in the accessories menu) and type R. It will run in command line. | You might also want to install r-base-dev if you want to compile libraries. For the record, under Kubuntu, I see it

Re: [R-sig-Debian] [ESS] Process SAS is not running... error on Ubuntu

2008-07-12 Thread Dirk Eddelbuettel
(This appeared on r-sig-debian by hand-approving Dale's message as he is not a subscriber. I am also CCing the maintainer list ess-debian, and keeping Dale CCed. He may get bounced there too... --Dirk) On 12 July 2008 at 12:22, Dale Steele wrote: | It does appear the ess package on CRAN for

Re: [R-sig-Debian] Conflict between octave3.0-headers and r-base-dev

2008-08-12 Thread Dirk Eddelbuettel
Gad, Thanks for the bug report and for using the appropriate list for it. On 12 August 2008 at 14:31, Gad Abraham wrote: | Hi, | | I'm using Ubuntu Hardy i386, and the R 2.7.1 Ubuntu packages from CRAN. | | The CRAN r-base-dev package depends on refblas3-dev or atlas3-base-dev, | but

Re: [R-sig-Debian] R 2.7.2 kernlab issues

2008-08-27 Thread Dirk Eddelbuettel
Josh, On 27 August 2008 at 13:24, Josh Stumpf wrote: | Hello, | | After upgrading to 2.7.2 this morning via the cran repository, I get the | following error when calling R via the command line: | | Error in dyn.load(file, DLLpath = DLLpath, ...) : | unable to load shared library |

Re: [R-sig-Debian] (Current) Ubuntu : r-base-dev seems incompatible with atlas-base-dev.

2008-08-29 Thread Dirk Eddelbuettel
Emmanuel, On 30 August 2008 at 00:04, Emmanuel Charpentier wrote: | Dear list, | | Setup : Ubuntu Hardy + updates + backports + security + R repository on | a 3.2 GHz PIV dual-core processor. | | Bitten (again...) by the I'll optimize my setup bug, I tried to test | atlas. Following Dirk's

Re: [R-sig-Debian] [R-sig-debian] compiling from source

2008-10-07 Thread Dirk Eddelbuettel
), updating very | frequently, and deal with issues from time to time, then I'd just | use | the Debian packages (the maintainer, Dirk Eddelbuettel, keeps them | barely hours behind the upstream releases). If you're using other | Debian branches, but still want to use the latest R, options get

Re: [R-sig-Debian] how to convert source code in windows package for linux (ubuntu)

2008-10-11 Thread Dirk Eddelbuettel
to | push first to get this running under linux. | -- | Edzer | | Dirk Eddelbuettel wrote: | | On 10 October 2008 at 15:42, Josh Harmsen wrote: | | The package is RSAGA | http://cran.r-project.org/web/packages/RSAGA/index.html | | | CRAN does have the package source available, which

Re: [R-sig-Debian] [Rd] problem with update.packages (PR#13161)

2008-10-14 Thread Dirk Eddelbuettel
1.2-34 available at http://cran.r-project.org Update (y/N/c)? n [...] But how do I find out which package this is, and why did R 2.7.2 didn't fall over? Dirk | | On Tue, 14 Oct 2008, Dirk Eddelbuettel wrote: | | | On 14 October 2008 at 10:09, Prof Brian Ripley wrote: | | On Tue, 14 Oct

Re: [R-sig-Debian] r-cran-vars?

2008-10-27 Thread Dirk Eddelbuettel
On 28 October 2008 at 03:34, Arnaud Battistella wrote: | Thanks a lot for your help! Just one last thing: how can we make sure | not to have duplicate version of packages (Debian CRAN) and how bad | can this be? That's two last things if my counting is right :) a) We cannot avoid as the two

Re: [R-sig-Debian] Rdevices.h is not Included in Recent Packages

2008-11-11 Thread Dirk Eddelbuettel
On 11 November 2008 at 14:22, Ben Woodcroft wrote: | I am trying to install RSRuby (http://rubyforge.org/projects/rsruby/) which | somewhat analogous to RPy. | | Installation fails using the cran R 2.8.0 packages for Ubuntu Intrepid | because RDevices.h does not appear to be included in the

Re: [R-sig-Debian] Update to 2.8 and problem with liblapack

2008-11-16 Thread Dirk Eddelbuettel
On 16 November 2008 at 13:48, Matthieu Stigler wrote: | Hello | | Reinstalling with apt-get did not work (same message error) but proper That could then be an Ubuntu bug that they need to rebuild the distribution's r-cran-matrix package. Could you please follow-up and file an Ubuntu bug

Re: [R-sig-Debian] R-packages updates

2008-11-17 Thread Dirk Eddelbuettel
On 17 November 2008 at 12:39, Arnaud Battistella wrote: | Hi, | I have 2 quick questions: | 1/ I installed some packages not available in Debian (vars, VaR, quantmod) | in /usr/local/lib/R/site-library. Now, I would like to be able to update | them using update.packages(); however,

Re: [R-sig-Debian] plans for lenny-cran? can I help?

2009-02-06 Thread Dirk Eddelbuettel
Piet, I think you need to enable the backport archive as the README suggests. IIRC that will help with gfortran and tcl/tk 8.5. Others run that happily, so we should be able to help you. I actually don't run etch anywhere myself so I will defer to others. Dirk -- Three out of two people

Re: [R-sig-Debian] Installing R on Debian testing...

2009-03-19 Thread Dirk Eddelbuettel
On 19 March 2009 at 10:08, tyler wrote: | Petar Milin pmi...@ff.uns.ac.rs writes: | | I have posted this question at the R-HELP, general. | | This is definitely the place for such questions. Yup. | I recently switched to Debian testing OS and explanation at the: |

Re: [R-sig-Debian] R-SIG-Debian Digest, Vol 43, Issue 2

2009-03-20 Thread Dirk Eddelbuettel
On 20 March 2009 at 12:34, Petar Milin wrote: | b) that said, you can often get R from Debian unstable onto testing. I | do | that, but that is a more advanced route than what you asked. | | So, that would mean: |deb http://http.us.debian.org/debian/ unstable main contrib non-free Yes --

Re: [R-sig-Debian] Are there Debian/Ubuntu packages of the beta versions of R-2.9.0

2009-04-04 Thread Dirk Eddelbuettel
On 4 April 2009 at 10:44, Douglas Bates wrote: | I embarrassed to need to ask this but I haven't seen any announcements | yet of Debian or Ubuntu builds of R-2.9.0 now that it has gone to beta | status. Am I just not looking in the right place? Probably :) Try

Re: [R-sig-Debian] Are there Debian/Ubuntu packages of the betaversions of R-2.9.0

2009-04-05 Thread Dirk Eddelbuettel
On 5 April 2009 at 12:21, Michael Rutter wrote: | Would it be reasonable to put the beta version of the source packages | (and only the source packages) on the CRAN repository? That way, the | response to those who want to try out the beta test version of the | Debian package could be to use

Re: [R-sig-Debian] Are there Debian/Ubuntu packages of the betaversions of R-2.9.0

2009-04-05 Thread Dirk Eddelbuettel
of this is somewhat underdocumented Cheers, Dirk | Cheers | Paul | | -Original Message- | From: Dirk Eddelbuettel e...@debian.org | To: Paul Leo p@uq.edu.au | Cc: Dirk Eddelbuettel e...@debian.org, Michael Rutter ma...@psu.edu, | Douglas Bates ba...@stat.wisc.edu, r-sig-debian | r-sig

Re: [R-sig-Debian] demonstrate multiple core use

2009-04-08 Thread Dirk Eddelbuettel
Erin, This is more of a r-sig-hpc question than an r-sig-debian question ... On 8 April 2009 at 15:59, Erin Hodgess wrote: | I have a quad core computer and I'd like to run some Rmpi code. | | However, I would like to be able to demonstrate that all 4 cores are running. | | Is there a way to

Re: [R-sig-Debian] demonstrate multiple core use

2009-04-08 Thread Dirk Eddelbuettel
On 8 April 2009 at 17:00, Dirk Eddelbuettel wrote: | Erin, | | This is more of a r-sig-hpc question than an r-sig-debian question ... | | On 8 April 2009 at 15:59, Erin Hodgess wrote: | | I have a quad core computer and I'd like to run some Rmpi code. | | | | However, I would like to be able

[R-sig-Debian] build dependencies was Re: [R] problem with rgl package

2009-05-07 Thread Dirk Eddelbuettel
Howdy, On 7 May 2009 at 11:28, G. Jay Kerns wrote: | Dear R-SIG-Debian, | | | a) You still haven't explained why you need to rebuild it when |sudo apt-get install r-cran-rgl |gets you a binary | | I do not want to answer for the OP, but for myself, two things: | | 1) I

Re: [R-sig-Debian] rgl install failed...

2009-05-16 Thread Dirk Eddelbuettel
! But can that be messy if I start installing via apt-get | instead of using something like: Nope. I fear you got that wrong. Dirk | install.packages() or | R CMD INSTALL | | I installed via apt-get only r-base and r-base-dev, and everything else | via R itself. | | Best, | PM | | Dirk

Re: [R-sig-Debian] piping to littler

2009-06-01 Thread Dirk Eddelbuettel
On 1 June 2009 at 13:06, Sebastian P. Luque wrote: | Hi, | | This code used to work well until a few months ago (I haven't used it | since), but now it's giving this: | | ---cut here---start-- | $ cat EOF | r - | locs -

Re: [R-sig-Debian] Installing and maintaining R on Ubuntu 9.04 -, best practice

2009-06-14 Thread Dirk Eddelbuettel
On 14 June 2009 at 17:09, Graham Smith wrote: | John and Dirk | | Thanks you both for this, I did search the archives (probably using | the wrong terms) and only found vague mention to the issue, but a Wiki | entry giving the sort of overviw you have just given might be useful. | | It's seems

Re: [R-sig-Debian] sprof works on your Debian/Ubuntu ?

2009-06-30 Thread Dirk Eddelbuettel
On 30 June 2009 at 14:03, Paul Johnson wrote: | On Tue, Jun 30, 2009 at 1:09 PM, Paul Johnsonpauljoh...@gmail.com wrote: | On Sun, Jun 28, 2009 at 3:04 PM, Dirk Eddelbuettele...@debian.org wrote: | | Paul, | | | Yes, rebuilding only the parts you want to profile using google-perftools is |

Re: [R-sig-Debian] Ubuntu und R

2009-07-13 Thread Dirk Eddelbuettel
Gunnar, On 13 July 2009 at 21:58, Gunnar Hoyer wrote: | Hallo Zusammen, Welcome but please note that this an English-language list. | hatte gestern die Schnauze voll von Vista und habe mir daraufhin Ubuntu | installiert. Bin also mit Ubuntu überhaupt nicht vertraut. | | Nun habe ich ohne

[R-sig-Debian] [ANNOUNCEMENT] cran2deb: 1700+ new Debian / R packages

2009-07-13 Thread Dirk Eddelbuettel
Announcing cran2deb: 1700+ Debian packages from almost all of CRAN -- Last Friday's presentation at UseR! 2009 was the first really public mention of 'cran2deb'. It provides Debian packages of all of CRAN. It started as Charles'

Re: [R-sig-Debian] Ubuntu JGR

2009-07-14 Thread Dirk Eddelbuettel
On 14 July 2009 at 09:45, Gunnar Hoyer wrote: | Hello, | | I cannot get JGR installed. | | Here is what I have tried so far http://wiki.ubuntuusers.de/R | | 1. sudo -s# root werden |R CMD javareconf | | r...@gunnar-laptop:~# R CMD javareconf | Java interpreter : /usr/bin/java |

Re: [R-sig-Debian] [ANNOUNCEMENT] cran2deb: 1700+ new Debian / R packages

2009-07-14 Thread Dirk Eddelbuettel
. | | Thanks! | | Piet | | On Mon, Jul 13, 2009 at 03:44:21PM -0500, Dirk Eddelbuettel wrote: | Announcing cran2deb: 1700+ Debian packages from almost all of CRAN | -- | | Last Friday's presentation at UseR! 2009 was the first

Re: [R-sig-Debian] [ANNOUNCEMENT] cran2deb: 1700+ new Debian / R packages

2009-07-14 Thread Dirk Eddelbuettel
Hi Michael, On 14 July 2009 at 18:44, charles blundell wrote: | 2009/7/13 Michael Rutter ma...@psu.edu | 1. Are there any negatives going from an install.packages(foo) | approach using R then switching to an apt-get install r-cran-foo | method of installing packages? If I install a deb

Re: [R-sig-Debian] cannot upgrade to R 2.9.1 in Ubuntu

2009-08-10 Thread Dirk Eddelbuettel
On 10 August 2009 at 11:06, Luis Ridao Cruz wrote: | R-SIG-Debian help, | | At the moment the R version installed on my machine is 2.8.1. (Ubuntu 9.04) | I wish to upgrade to R 2.9.1. | | I did: | $ sudo apt-get upgrade Just to bring closure here -- further off-list mail lead to $ sudo

Re: [R-sig-Debian] Difference between depends on and import

2009-08-29 Thread Dirk Eddelbuettel
Salut Denis. On 29 August 2009 at 14:46, denis brion wrote: | Hi | I have noticed that, in some packages description, two fields are existing | : depends on and imports . Where could I find the definition/difference | between these two notions ? Well, that has nothing to do with 'R on

Re: [R-sig-Debian] ROracle ubuntu64 issue

2009-09-08 Thread Dirk Eddelbuettel
On 8 September 2009 at 19:55, Arun Eamani wrote: | Hi, | i have R on ubuntu64 | | i got ROracle database connection issues as seen below | | at a loss do to what next | | library(ROracle) | Loading required package: DBI | m - dbDriver(Oracle) | con - dbConnect(m, username=EPICEDF,

Re: [R-sig-Debian] rgl, openmesa, nvidia. Oh my!

2009-09-21 Thread Dirk Eddelbuettel
On 21 September 2009 at 20:42, Paul Johnson wrote: | I've caused a new problem for myself. I wonder if you have seen it. | On Ubuntu 9.04 I had a lot of hangs with the nvidia packages and so I | updated to the 185 edition on this website: | | https://launchpad.net/~nvidia-vdpau/+archive/ppa |

Re: [R-sig-Debian] Converting libraries for different operating systems

2009-09-22 Thread Dirk Eddelbuettel
On 22 September 2009 at 07:13, lamo...@email.unc.edu wrote: | Dear list members, | | I used a R package some years ago with an older version of R in | sparc-sun-solaris2 (Unix) machine. I have to redo some of those | analysis, but now my machine is ubuntu. I'm getting the following error

Re: [R-sig-Debian] error installing/compiling kernlab

2009-10-05 Thread Dirk Eddelbuettel
. Hope this helps, Dirk | | Thanks again, | Mircea | | Dirk Eddelbuettel said the following on 2009-10-04 10:29: | On 4 October 2009 at 09:54, Mircea Trandafir wrote: | | | | Hi everybody, | | | | | | | | I'm using R on a 64-bit Ubuntu 9.04 (Jaunty). I prefer to install R | | packages

Re: [R-sig-Debian] REvolution R sneaking inside Ubuntu ???

2009-10-05 Thread Dirk Eddelbuettel
On 5 October 2009 at 09:52, Martin Maechler wrote: | Read this on R-help, | subject [R] Ubuntu, Revolutions, R. | | I can hardly believe it's true and at the moment suspect | that Andrew has a very unusual '/etc/apt/sources.list' or | (an analogoue of that) | | Any qualified comments, | Dirk

Re: [R-sig-Debian] vignette() failure

2009-10-06 Thread Dirk Eddelbuettel
On 6 October 2009 at 16:23, Sebastian P. Luque wrote: | Hi, | | I can't pinpoint exactly since what R version I first noticed this | error, but are others seeing this? | | R vignette(grid) | R sh: : command not found It's a bug. If I look at /etc/R/Renviron I see ## Default PDF viewer

Re: [R-sig-Debian] Conflict Between R and multimedia repositories

2009-11-08 Thread Dirk Eddelbuettel
Thank you for posting here rather than on r-help as I suggested. Now, please re-read what I wrote in response to your first post on the r-help list as On 8 November 2009 at 18:16, Lorenzo Isella wrote: | deb http://cran.ch.r-project.org/bin/linux/debian lenny-cran/ | deb-src

Re: [R-sig-Debian] Upgrading R packages on Etch

2009-11-10 Thread Dirk Eddelbuettel
Ted, On 10 November 2009 at 08:39, (Ted Harding) wrote: | Greetings, | I've been trying to upgrade R packages on my Debian Etch | (whose other upgrades I have been cheerfully going along | with as they occur). | | When I did, just now: | | sudo apt-get dist-upgrade | | I got: | | Reading

Re: [R-sig-Debian] cran2deb for Ubuntu?

2009-11-10 Thread Dirk Eddelbuettel
On 11 November 2009 at 08:38, Etienne Laliberté wrote: | Sorry if this has been answered somewhere else (didn't see it), but is | cran2deb fully compatible with Ubuntu? To the best of my knowledge, nobody ever claimed it was. I have seen people state that they use the packages [ that are built

Re: [R-sig-Debian] debian and cran2deb name clashes

2009-11-15 Thread Dirk Eddelbuettel
On 15 November 2009 at 12:10, Liviu Andronic wrote: | Dear all | Recently I noticed that there are name clashes between the packages | proposed in the Debian testing repos and cran2deb. For example, | Synaptic proposes to upgrade from xtable | 1.5-6-1cran1 (cran2deb, up-to-date CRAN version) to |

Re: [R-sig-Debian] debian and cran2deb name clashes

2009-11-18 Thread Dirk Eddelbuettel
On 18 November 2009 at 10:54, Liviu Andronic wrote: | Hello | | On 11/15/09, Dirk Eddelbuettel e...@debian.org wrote: | Fix the version number in the (manually packaged) xtable package? So maybe | you want to file a Debian bug report. | | I checked several packages and it seems

Re: [R-sig-Debian] problems with Rcmdr on R-2.10.0 with Karmic Koala

2009-11-23 Thread Dirk Eddelbuettel
On 23 November 2009 at 14:27, Hodgess, Erin wrote: | Hi! | | By using the update.packages(checkBuilt=TRUE) statement, I got rid of the MASS error. | | I got the packages from the Berkeley CRAN repository. | | But the Rcmdr menu screen is not appearing. I think that there may be an issue

Re: [R-sig-Debian] problems with Rcmdr on R-2.10.0 with Karmic Koala

2009-11-24 Thread Dirk Eddelbuettel
of Houston - Downtown | mailto: hodge...@uhd.edu | | | | -Original Message- | From: Dirk Eddelbuettel [mailto:e...@debian.org] | Sent: Mon 11/23/2009 4:44 PM | To: Hodgess, Erin | Cc: ma...@psu.edu; r-sig-debian@r-project.org | Subject: Re: [R-sig-Debian] problems with Rcmdr on R-2.10.0

Re: [R-sig-Debian] [OT] What file can I use to change Ubuntu 9.10 display characteristics?

2009-12-04 Thread Dirk Eddelbuettel
On 4 December 2009 at 13:24, Douglas Bates wrote: | This question is vaguely related to R in that I have managed to wedge | the netbook computer that I use for demonstrations of R and I would | like to know how to un-wedge it so I can continue to give lectures | about R. | | I have an ASUS eee

Re: [R-sig-Debian] Breakage on Debian unstable, be careful with upgrades

2009-12-28 Thread Dirk Eddelbuettel
On 28 December 2009 at 12:33, Dirk Eddelbuettel wrote: | Ben Goodrich alerted me to some breakage coming from read.dcf() meaning you | can no longer install or upgrade R packages. ChenLiang Xu was eagle-eyed and | related this to gzfile() and he and Johannes Fichting confirmed that a | downgrade

[R-sig-Debian] Breakage on Debian unstable, be careful with upgrades

2009-12-28 Thread Dirk Eddelbuettel
Ben Goodrich alerted me to some breakage coming from read.dcf() meaning you can no longer install or upgrade R packages. ChenLiang Xu was eagle-eyed and related this to gzfile() and he and Johannes Fichting confirmed that a downgrade to zlib1g from testing fixes things. Ben already filed a

Re: [R-sig-Debian] cran2deb repository and Squeeze?

2010-01-11 Thread Dirk Eddelbuettel
On 11 January 2010 at 17:09, Christopher David Desjardins wrote: | Hi, | I am curious what will happen to cran2deb: | | deb http://debian.cran.r-project.org/cran2deb/debian-amd64 testing/ | | When Squeeze is released? We will upgrade to what is the-then-new testing and continue. Why would

Re: [R-sig-Debian] cran2deb repository and Squeeze?

2010-01-11 Thread Dirk Eddelbuettel
On 11 January 2010 at 19:59, Christopher David Desjardins wrote: | On Mon, 2010-01-11 at 19:32 -0600, Dirk Eddelbuettel wrote: | On 11 January 2010 at 17:09, Christopher David Desjardins wrote: | | Hi, | | I am curious what will happen to cran2deb: | | | | deb http://debian.cran.r

Re: [R-sig-Debian] Clash between r-cran-vr and r-cran-mass

2010-01-30 Thread Dirk Eddelbuettel
[ Kevin sent this to me but agreed that it's better to have this discussed here. ] On 30 January 2010 at 11:35, Kevin Donnelly wrote: | I am using Ubuntu 9.10. Installing r-cran-latticist asks for r-cran-vr to | be installed as well, but this gives the following message: | E:

Re: [R-sig-Debian] stable, testing, and backports

2010-01-30 Thread Dirk Eddelbuettel
[ Missed this folder for a few days. Too much mail... ] On 25 January 2010 at 23:25, Ross Boylan wrote: | The cran2deb archives target testing. | I just pulled a package from them onto a stable system; the library | loaded but said | library(akima) | Warning message: | package 'akima' was

Re: [R-sig-Debian] Clash between r-cran-vr and r-cran-mass

2010-01-30 Thread Dirk Eddelbuettel
On 30 January 2010 at 21:35, Kevin Donnelly wrote: | On Saturday 30 January 2010 17:18, Dirk Eddelbuettel wrote: | It's a somewhat long story: | snip | | Thanks for the explanation - that makes it clear. I understand the caveats | with Ubuntu, but so far everything seems to work - then again

Re: [R-sig-Debian] Trouble updating to latest version of R

2010-01-31 Thread Dirk Eddelbuettel
On 31 January 2010 at 20:24, Hodgess, Erin wrote: | Dear R Debian People: | | I'm trying to update a computer that I do not use often to the latest version of R. | | Here is the problem: | | debian:/home/erinh# apt-get -t unstable install r-base r-base-dev | Reading package lists... Error! |

Re: [R-sig-Debian] A newbee problem compiling R in ubuntu.

2010-02-01 Thread Dirk Eddelbuettel
On 1 February 2010 at 00:16, Paul Johnson wrote: | On Sun, Jan 31, 2010 at 10:02 PM, Kenneth Roy Cabrera Torres | krcab...@une.net.co wrote: | Dear R users: | | Maybe it is a silly question, but I'm don't understand what am I doing | wrong (I make the same steps, and it works). | | In a new

[R-sig-Debian] Let's stop this thread now (Was: accessing the Windows side from Debian)

2010-02-02 Thread Dirk Eddelbuettel
Folks, That was a question that should not have asked here in the first place, so let us please put the thread to rest. There are many kind souls here who are willing to help, but I would like to ask you to do so off-list. This list is about using R on Debian/Ubuntu. Consider the 'on' as

Re: [R-sig-Debian] Installation woes for rattle (and other packages)

2010-02-03 Thread Dirk Eddelbuettel
On 3 February 2010 at 14:02, Prof. John C Nash wrote: | Thanks to both Dirk and Paul for suggestions. Afraid I forgot to mention that my source of | inspiration was the rattle page | http://datamining.togaware.com/survivor/Install_GNU_Linux.html | | where the implication (am I reading

Re: [R-sig-Debian] Installation woes for rattle - partial success.

2010-02-03 Thread Dirk Eddelbuettel
On 3 February 2010 at 17:12, Prof. John C Nash wrote: | Below is how I got a clean Ubuntu Karmic VM to start rattle. I didn't actually try | calculations. Mixture of Paul and Dirk advice. | | - Changed /etc/apt/sources to use the CRAN debian repository for Ubuntu Karmic, i.e., | deb

Re: [R-sig-Debian] Cran2deb and Ubuntu

2010-02-15 Thread Dirk Eddelbuettel
On 15 February 2010 at 12:38, Lorenzo Isella wrote: | Dear All, | I am running (X)Ubuntu 9.10 for the amd64 architecture on both my laptop | e desktop. | I came across the posts | | http://ubuntuforums.org/showthread.php?t=1336062 |

Re: [R-sig-Debian] Emacs and R

2010-02-22 Thread Dirk Eddelbuettel
(this is really off-topic here) On 22 February 2010 at 15:53, Luis Ridao Cruz wrote: | I'm working on Ubuntu 9.10 and have installed emacs (GNU Emacs 22.2.1) | | I wish to embed R into emacs. | I have looked at some websites on how to integrate both but | it doesn't seem to work. | | Can I get

Re: [R-sig-Debian] installing ROCR/gplots packages blows up memory

2010-02-23 Thread Dirk Eddelbuettel
Andrew, On 23 February 2010 at 17:30, Andrew Ziem wrote: | Thanks for the tip. I installed R 2.10.1 from the CRAN repo and found | .deb packages r-cran-rocr and r-cran-gplots, so that fixes my initial | package installation problem. FWIW I quickly ran install.packages() for ROCR on my Ubuntu

Re: [R-sig-Debian] Simple question from a simple(minded) user: where to go cran2deb or .../debian lenny-cran/

2010-02-25 Thread Dirk Eddelbuettel
On 24 February 2010 at 09:27, Petar Milin wrote: | Hello ALL! | I just put fresh Debian testing on my new laptop. A while ago I have | used it, but in meantime I used Ubuntu. Now, I wonder should I go for: | http://debian.cran.r-project.org/cran2deb/debian-amd64/ That gives CRAN packages in .deb

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