Re: [R-sig-eco] ape prop.part error malloc(): memory corruption

2017-06-01 Thread Mario José Marques-Azevedo
​Dears, Excuse me. I replied to wrong group. Regards, Mario​ [[alternative HTML version deleted]] ___ R-sig-ecology mailing list R-sig-ecology@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-ecology

Re: [R-sig-eco] [R-sig-phylo] ape prop.part error malloc(): memory corruption

2017-06-01 Thread Mario José Marques-Azevedo
/r-functions/blob/master/drop.clade.label/example.md ). As I said, extract.node was working months ago. I don't know if this error is some updated that I did. Best regards, Mario On 1 June 2017 at 11:43, Mario José Marques-Azevedo <mariojm...@gmail.com> wrote: > Dear Klaus, >

Re: [R-sig-eco] [R-sig-phylo] ape prop.part error malloc(): memory corruption

2017-06-01 Thread Mario José Marques-Azevedo
without problem. Maybe some update that I did, but I'm not sure. Thank you again! Best regards, Mario ​ Mario José Marques-Azevedo Ph.D. Candidate in Ecology Department of Plant Biology, Institute of Biology University of Campinas

Re: [R-sig-eco] Doubt about mle2, optim and convergence

2014-11-13 Thread Mario José Marques
, take a look at Ben Bolkers 'Ecological Models and Data in R'. The chapter 'Optimization and all that' therein should be a good reference. Cheers, Eduard Szöcs On 12/11/14 13:36, Mario José Marques wrote: Hi all! I am working with species abundance distribution using biomass

[R-sig-eco] Doubt about mle2, optim and convergence

2014-11-12 Thread Mario José Marques
Hi all! I am working with species abundance distribution using biomass as abundance measure. For this, I am trying to fit models gamma, weibull and lognormal to my data. I have problems specially with gamma and weibull. When I try fit this models, the mle2 fit without error, but the fit not

Re: [R-sig-eco] AEM or PCNM packages

2014-06-29 Thread Mario José Marques
Hi Jesse, excuse me if you tried it yet, but try this: install.packages(AEM, repos = http://R-Forge.R-project.org;) install.packages(PCNM, repos = http://R-Forge.R-project.org;) or download binary from: http://r-forge.r-project.org/R/?group_id=195 The packages was compiled to 3.0 version, but

Re: [R-sig-eco] [Fwd: Re: how to detect different species among samples]

2014-02-07 Thread Mario José Marques
, Mario ... Mario José Marques Doctoral student in Ecology Institute of Biology, Dept. Plant Biology, Ecology Lab. State University of Campinas - UNICAMP Campinas, São Paulo, Brazil On 07-02-2014 09:30, Gian Maria Niccolò Benucci wrote: Dear Martin

Re: [R-sig-eco] Diversity on standardised densities in R

2013-10-25 Thread Mario José Marques
Hi Paris, excuse-me if I do not understand you. I think that or you standardize you effort to less individual in your samples or you extrapolation your sample to that more abundant. If you have sample with less individual, like you say, it is not recomended to do extrapolation. If your

[R-sig-eco] Multiple regression

2013-01-04 Thread Mario José Marques
like this: lm(y ~ x + w + z + I(z^2)) the model statistic is not correct because, for instance, x response with w, z, and I(z^2) constant and not response of z corrected by z^2. How can I do this with lm. Kind regards, Mario -- ... Mario José