Re: [R-sig-eco] Error with "raup" distance, in metaMDS

2011-03-29 Thread Manuel Spínola
Thank you very much Brian. Best, Manuel On 28/03/2011 06:07 a.m., Brian Inouye wrote: > There are other dissimilarity metrics that could also be used, each > with different assumptions of course. > Raup-Crick is a reasonable choice of distance metric, but I'm not sure > if the current version

Re: [R-sig-eco] Error with "raup" distance, in metaMDS

2011-03-28 Thread Brian Inouye
There are other dissimilarity metrics that could also be used, each with different assumptions of course. Raup-Crick is a reasonable choice of distance metric, but I'm not sure if the current version of vegdist() has been updated to reflect discussion in Chase et al 2011 in Ecosphere (http://ww

Re: [R-sig-eco] Error with "raup" distance in metaMDS

2011-03-27 Thread Jari Oksanen
On 26/03/11 17:35 PM, "Manuel Spínola" wrote: > Dear list members, > > I got an error message working with Raup–Crick distance in metaMDS. > >> flora.mds = metaMDS(indicadora, distance = "raup", trace = FALSE, zerodist > = "ignore") > Error in isoMDS(dist, k = k, trace = isotrace) : > zero or

[R-sig-eco] Error with "raup" distance in metaMDS

2011-03-26 Thread Manuel Spínola
Dear list members, I got an error message working with Raup–Crick distance in metaMDS. > flora.mds = metaMDS(indicadora, distance = "raup", trace = FALSE, zerodist = "ignore") Error in isoMDS(dist, k = k, trace = isotrace) : zero or negative distance between objects 1 and 2 In addition: Warning