Re: [R-sig-eco] Community distance matrix deconstruction

2014-12-12 Thread Jari Oksanen
Kate, Your question really may need some clarification, but at the moment it looks to me that you want to have row indices and column indices for your dissimilarities, and information about within/between dissimilarities. If this is what you want to have, it is an easy task. In the following I

[R-sig-eco] Community distance matrix deconstruction

2014-12-12 Thread Kate Boersma
Hi all. I have a community analysis data manipulation puzzle for you... hopefully someone can help. Please let me know if this question needs clarification, has previously been answered, or would be better sent to a different list. Details follow. Thank you, Kate --- Here is a simplified ve

Re: [R-sig-eco] How do I interpret linear mixed model contrast estimates from multcomp::glht()?

2014-12-12 Thread Matthew Van Scoyoc
​As I was suspecting, the answer is in contrast::contrast(). I'm going to take this over to r-sig-mixed-models since that mailing list might be more appropriate than ecology.​ Thanks Thierry, I appreciate the help. Cheers MVS = Matthew Van Scoyoc https://sites.google.com/site/scoyoc/ = T

Re: [R-sig-eco] How do I interpret linear mixed model contrast estimates from multcomp::glht()?

2014-12-12 Thread ONKELINX, Thierry
Dear Matthew, The part before "== 0" are the rownames of the matrix passed to linfct. When the rownames are missing, the rownumbers are used. Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / t