Angie,
You could apply customized contrasts. Check this:
http://thebiobucket.blogspot.com/2011/08/two-way-permanova-adonis-with-custom.html
I'd also appreciate comments on the approach that I used in the
above-mentioned link!
Cheers,
Kay
Zitat von Angie Larsen allgut...@gmail.com:
..to be save I would consider to exclude an effect due to different
multivariate spread. See chapter 5.2, Homogeneity of groups and beta
diversity, in the vegan tutorial at
http://cc.oulu.fi/~jarioksa/opetus/metodi/vegantutor.pdf.
best,
kay
Zitat von Gavin Simpson
...@gmail.com:
Dear Kay,
I ran your code and found no significant interactions. You just got
unlucky with rnorm(), as can happen. Try it again.
Cheers,
Etienne
-Original Message-
From: r-sig-ecology-boun...@r-project.org
[mailto:r-sig-ecology-boun...@r-project.org] On Behalf Of Kay Cecil
hello all,
in https://stat.ethz.ch/pipermail/r-sig-ecology/2010-April/001221.html
jari oksanen describes how to use custom contrasts with adonis.
i'm curious whether there's also a way to yield the according
significance tests - else i don't see much purpose in customizing your
gavin,
sorry - of course it should be permute.strata=F, permuting within
individual sites!
but despite of this the code should work, doesn't it?
thanks,
kay
Gavin Simpson schrieb:
On Wed, 2010-11-10 at 23:33 +0100, Kay Cecil Cichini wrote:
hi eduard,
i faced similar problems recently
- beeing a male name opposed to the english kay.
Gavin Simpson schrieb:
[Apologies - I replied with this only to Kay. Hopefully she won't mind
receiving it twice!]
On Thu, 2010-11-11 at 10:32 +0100, Kay Cecil Cichini wrote:
thanks a lot for your elaborations.
of course, envfit(..,strata=rep.mes
hi eduard,
i faced similar problems recently and came to the below solution.
i only try to address the pseudoreplication with an appropiate
permutation scheme.
when it comes to testing the interactions, things may get more complicated.
the code is in no way approven of, but at least it maybe
hello all,
i want to know whether pooled invaded quadrats (n=6) show decreased
diversity compared to pooled uninvaded quadrats (n=6) - or in other
words, whether species are lacking from invaded quadrats.
to yield confidence limits i bootstrapped pooled absence/presence
species data from
