Re: [R-sig-eco] [Fwd: Re: how to detect different species among samples]

2014-02-12 Thread Gian Maria Niccolò Benucci
Dear Martin and Mario, thanks a lot, both of your code work greatly... Now I have species that are common between two selected sites, but how to to detect species that are unique between two selected sites? in other words which species is present in the site A and which other in the site B?

Re: [R-sig-eco] [Fwd: Re: how to detect different species among samples]

2014-02-07 Thread Gian Maria Niccolò Benucci
Dear Martin and dear all, I tried your approach but I suppose it does not work... my commands are the following, where's my mistake? head(dune) Belper Empnig Junbuf Junart Airpra Elepal Rumace Viclat Brarut Ranfla Cirarv 2 3 0 0 0 0 0 0 0 0 0

Re: [R-sig-eco] [Fwd: Re: how to detect different species among samples]

2014-02-07 Thread Mario José Marques
Hi Gian, in your code, you selected column and do logic test when what you want is to do test in line In dune data, sites are lines, then: # Select species with abundance 0 on line 1 spp1 - names(dune[1, dune[1, ] 0]) # Select species with abundance 0 on line 2 spp2 - names(dune[2,

[R-sig-eco] [Fwd: Re: how to detect different species among samples]

2014-02-03 Thread Martin Weiser
Hi Gian, there are many ways to do it. In the line with my previous post, you can do: new.data - dune[c(Line.number.where.sampleA.I.am.interested.in.lies, Line.number.where.sampleB.I.am.interested.in.lies), ] and proceed with the new.data like with the dune (as I wrote you already) another