his helps
>
> Steve
>
> From: Erin Nuccio [enuc...@gmail.com]
> Sent: Saturday, March 09, 2013 9:09 PM
> To: JOHN S BREWER
> Cc: r-sig-ecology@r-project.org
> Subject: Re: [R-sig-eco] Adonis and Random Effects
>
> Hi Steve and R li
e residual
>>> error term, which will be wrong, but you ca!
n ignore that. I've tried it with my own data and it works. One cautionary
note. See the posts by Jari Oksanen and others about the versions of
BiodiversityR and R used.
>>>
>>> Hope this helps
>>>
ich will be wrong, but you can!
ignore that. I've tried it with my own data and it works. One cautionary
note. See the posts by Jari Oksanen and others about the versions of
BiodiversityR and R used.
>>
>> Hope this helps
>>
>> Steve
>>
>> From: Erin
; Sent: Saturday, March 09, 2013 9:09 PM
> To: JOHN S BREWER
> Cc: r-sig-ecology@r-project.org
> Subject: Re: [R-sig-eco] Adonis and Random Effects
>
> Hi Steve and R list,
>
> I was hoping you could clarify something you mentioned in previous post.
>
> A quick recap
R used.
Hope this helps
Steve
From: Erin Nuccio [enuc...@gmail.com]
Sent: Saturday, March 09, 2013 9:09 PM
To: JOHN S BREWER
Cc: r-sig-ecology@r-project.org
Subject: Re: [R-sig-eco] Adonis and Random Effects
Hi Steve and R list,
I was hoping you co
Hi Steve and R list,
I was hoping you could clarify something you mentioned in previous post.
A quick recap... I have a split-plot design where I determined the microbial
communities at 3 grasslands (see post script for design). I am trying quantify
the how much of my community can be explain
Thanks Steve and Jari for your responses. I really do appreciate it -- trying
to analyze this data has been a challenge!
Based on both your responses, it seems like I won't be able to get adonis to do
the appropriate tests for the Grassland effect (since I do not know how to
design custom per
Erin,
There have been a lot of similar queries (e.g., repeated measures, nested
permanova). Jari can correct me if I am wrong, but as far as I know, no
one has developed a way to define multiple error terms in adonis.
You can use adonis, however, to get the split-plot effects. If you want to
mak
On 04/02/2013, at 09:14 AM, Erin Nuccio wrote:
>
> Is adonis capable of modeling random effects?
No, adonis does not know random effects.
The significance tests in adonis() are based on permutations. The key question
for random effects is: "can you design a permutation matrix that treats so
Hello List,
Is adonis capable of modeling random effects? I'm analyzing the impact of a
treatment on the microbial community in a split-plot design (2 treatments per
plot, 4 plots per grassland, 3 grasslands total). I would like to quantify how
much of the variance is due to the Treatment vers
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