[R-sig-eco] plotting models with confidence bands from glmer

2014-02-27 Thread Travis Belote
Hi all, I'm wondering if someone can help me figure out how to produce plots of model fits that include 95% CI bands for a generalized linear mixed model. I'm using glmer in lme4 to run essentially an ANCOVA to investigate a three-way interaction between one categorical variable (3 different

Re: [R-sig-eco] plotting models with confidence bands from glmer

2014-02-27 Thread Cade, Brian
Travis: I wonder if you can modify the example from predict.lm to do something comparable (saw this posting recently) with mixed effects models from glmer(). ?predict.lm Offers this example, which seems to meet the request x - rnorm(15) y - x + rnorm(15) predict(lm(y ~ x)) new - data.frame(x =

Re: [R-sig-eco] plotting models with confidence bands from glmer

2014-02-27 Thread Gavin Simpson
As with a GLM, I wouldn't expect there to be a difference between prediction and confidence intervals for a GLMM. Also, and related, the `interval` argument is particular to the `lm` method of `predict`. Ben Bolker has an example for a particular lme4 model on his GLMM wiki FAQ. Go to