Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-24 Thread Tom Hopper
Simon, That's a better way, indeed. I had missed your previous post, so thank you for reposting. My original motivation for the script was to sync certain "core" packages across multiple machines, but it works well for upgrades, too. The script also provides a means of weeding out my library by no

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-24 Thread Prof Brian Ripley
It's really odd that people blog about their own inefficient scripts rather than read the R documentation. Because this scripts checks (very inefficiently) if a package is already installed, it would not solve the problem discussed in this thread. And install.packages() takes a vector of pack

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-24 Thread Tom Hopper
There's a handy script to automate the update process that I came across some time ago at https://bridgewater.wordpress.com/2010/12/21/my-favorite-r-packages-installed-with-one-command/ When you run the script, it will automatically install the libraries that you set up in the script. When you run

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-24 Thread Simon Urbanek
On May 24, 2011, at 7:32 PM, Ian Reeve wrote: > Thanks Brian and Simon for the suggestions. > > update.packages(checkBuilt=TRUE) > > fixed the load problem and all the functions I was using in R 2.12 are > running identically in R 2.13.0. > > For future reference, when I update to a new versi

Re: [R-SIG-Mac] packages failed to load - Now fixed

2011-05-24 Thread Ian Reeve
Thanks Brian and Simon for the suggestions. update.packages(checkBuilt=TRUE) fixed the load problem and all the functions I was using in R 2.12 are running identically in R 2.13.0. For future reference, when I update to a new version of R, is it good practice to: sudo rm -rf /Library/Framewor

Re: [R-SIG-Mac] packages failed to load

2011-05-24 Thread Simon Urbanek
Ian, I agree with Brian. I checked the CRAN binaries of class and deldir and they are correctly linking to 2.13, so I suspect you have old packages in your tree. I don't think this can happen with stock R binary, it seems that at some point you moved packages or there is/was a symlink between so

Re: [R-SIG-Mac] packages failed to load

2011-05-24 Thread Prof Brian Ripley
On Tue, 24 May 2011, Carl Witthoft wrote: Just wanted to mention that I saw the same behavior with a package or two, and found the same workaround (copying libs to the 2.12 tree). Maybe, but this is about the recommended package 'class'. In the CRAN distribution oF R 2.13.0 tystie% otool -

Re: [R-SIG-Mac] packages failed to load

2011-05-24 Thread Carl Witthoft
Just wanted to mention that I saw the same behavior with a package or two, and found the same workaround (copying libs to the 2.12 tree). Carl Message: 4 Date: Tue, 24 May 2011 16:32:41 +1000 From: Ian Reeve To: "r-sig-mac@r-project.org" Subject: [R-SIG-Mac] Packages deldir, class and gpcl

Re: [R-SIG-Mac] function hint is missing in 2.13.0

2011-05-24 Thread David Winsemius
On May 10, 2011, at 3:56 PM, Hans-Jörg Bibiko wrote: On May 7, 2011, at 5:50 PM, Robert M Hirsch wrote: I downloaded R version 2.13.0 (2011-04-13). I am using [R.app GUI 1.40 (5751) i386-apple-darwin9.8.0] I do not get a function hint at the bottom of the console. I looked at the prefer