Re: [R-SIG-Mac] Problems to install a package

2015-07-30 Thread Davor Cubranic
It’s not just old Macs: I see the same warning on a late-2013 MacBook Pro (so the second-latest generation): $ gfortran --version gfortran: warning: couldn’t understand kern.osversion ‘14.4.0 GNU Fortran (GCC) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. Davor On Jul 28, 2015, at

Re: [R-SIG-Mac] Rmpi package

2014-03-02 Thread Davor Cubranic
You didn't provide details of your R installation. Was it also from Homebrew? Davor On Feb 28, 2014, at 9:17 AM, Paul Johnson paul54...@gmail.com wrote: I have had success in installing Rmpi on Mavericks, and it may be helpful to others: I first installed *gfortran* and *open-mpi*: brew

Re: [R-SIG-Mac] R-3.0.0: choice of gfortran compiler in install.packages()

2013-05-09 Thread Davor Cubranic
/doc/manuals/r-release/R-admin.html#OS-X-packages . On 08/05/2013 23:28, Davor Cubranic wrote: I don't see this on my machine: install.packages('fields', type='source') * installing *source* package 'fields' ... ** package 'fields' successfully unpacked and MD5 sums checked ** libs gfortran

Re: [R-SIG-Mac] Buffering console output in R.app

2013-02-26 Thread Davor Cubranic
On 2013-02-25, at 11:30 PM, Prof Brian Ripley wrote: On 25/02/2013 20:00, Davor Cubranic wrote: R.app GUI 1.53 (6335 Leopard build 64-bit) and R 2.15.2 GUI 1.53 Leopard build 64-bit (6335) When I have a long-running call into C or C++, any output I try to print to the console

Re: [R-SIG-Mac] Saving or copying graphics from Quartz returns empty file

2013-01-29 Thread Davor Cubranic
Even if Heather is using a suboptimal way to export graphics, it still shouldn't crash R though. Heather, if this is in any way reproducible, please include the code that causes the crash. Also, run R from the terminal with --vanilla option when reproducing if possible (to ensure a clean

Re: [R-SIG-Mac] Problem loading a package libraries (Error in dyn.load) on mac environments

2012-12-03 Thread Davor Cubranic
Looks like you might not have the 64-bit version of the Rcpp dynamic library installed on the first machine. On the second, check if you have the 32-bit version of both XML and expat's dynamic libraries. Davor On 2012-12-03, at 8:34 AM, Frederic Fournier wrote: Hello everyone, I'm

Re: [R-SIG-Mac] Problem loading a package libraries (Error in dyn.load) on mac environments

2012-12-03 Thread Davor Cubranic
Is rTandem built with the same version of Rcpp that is now installed (0.10.1)? The API changed a fair bit over the past few weeks. Davor On 2012-12-03, at 11:52 AM, Dan Tenenbaum wrote: On Mon, Dec 3, 2012 at 11:13 AM, Davor Cubranic cubra...@stat.ubc.ca wrote: Looks like you might not have

Re: [R-SIG-Mac] Naive question about permissions

2012-10-19 Thread Davor Cubranic
On 12-10-19 02:28 PM, Paul Hewson wrote: As I say, I think I've tracked the symlink itself as well as the files it links to /usr/bin/R is itself a symlink to R64.All three users have an x when you do ls -l , they don't all have r and w. Can you show us the output of running: ls -l

Re: [R-SIG-Mac] rgl configure error: missing required library GL

2012-07-17 Thread Davor Cubranic
On 2012-07-17, at 10:05 AM, Duncan Murdoch wrote: The aglrgl.so library is built from osxgui.mm and osxlib.cpp. I'd been assuming the problem was an API change in recent OSX 64 bit, but maybe it's a problem with the makefiles or the compiler. If you can suggest any fixes for this, I'd

Re: [R-SIG-Mac] installXLSXsupport() error

2012-07-16 Thread Davor Cubranic
You didn't have to go through the command line. In the R GUI's package installer, if you switched package repository to CRAN (sources), you would have found XLConnect there too. You don't mention the version of OS X you're running, but for me with Lion and R 2.15.1, I have the same problem.