Simon,
As usual, you are right.
It was that I could not get the compiled version of mvtnorm and so
had downloaded the source. Because I did not have the correct
fortran compiler, I could not compile it, so I tried using the
compiled version from 2.13. That works for RStudio and R under X11,
but does not work for R.app Gui (for R unstable).
Following your instructions at the att site (finally), I downloaded
the GNU Fortran 4.2.4 for Mac OS X 10.6 compiler, downloaded the
source for mvtnorm, compiled it, and everything works.
Thanks for the patience, sorry for the noise.
Bill
At 3:35 PM -0400 7/10/11, Simon Urbanek wrote:
Bill,
I highly doubt that this has anything to do with the GUI as it's not
even involved in the trace. Also I can't reproduce it with the
latest nightly build even on 10.5.8:
library(mvtnorm)
sessionInfo()
R Under development (unstable) (2011-07-09 r56345)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] mvtnorm_0.9-9991
qmvnorm(.95,sigma=diag(2),tail="both")
$quantile
[1] 2.236497
$f.quantile
[1] 2.5831e-06
attr(,"error")
[1] 1e-15
attr(,"msg")
[1] "Normal Completion"
$iter
[1] 11
$estim.prec
[1] 6.103516e-05
However, you setup seems fishy - there is no 1.41 GUI build for
R-devel, so are you sure you installed the correct files? If you are
not using the nightly builds, then you will need to provide a lot
more detail - compilers used, exact configure, BLAS etc. - and then
then you may have to look at the backtrace yourself since the CRAN
setup doesn't seem at have that issue.
Cheers,
Simon
On Jul 10, 2011, at 11:41 AM, William Revelle wrote:
Simon and the other developers of the wonderful R.Gui for the Mac,
The following code (anything using mvtnorm) reliably crashes R
(under development) when running from the GUI, but not when
running from the X11 window or under R-Studio.
I reported this several months ago but was told to wait for a
newer release. I believe I have the latest versions of R
(unstable), the R GUI, and mvtnorm.
library(mvtnorm)
sessionInfo()
R Under development (unstable) (2011-07-08 r56336)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] mvtnorm_0.9-9991 psych_1.0.99
qmvnorm(.95,sigma=diag(2),tail="both")
*** caught bus error ***
address 0x0, cause 'non-existent physical address'
Traceback:
1: .Fortran("mvtdst", N = as.integer(n), NU = as.integer(df),
LOWER = as.double(lower), UPPER = as.double(upper), INFIN =
as.integer(infin), CORREL = as.double(corrF), DELTA =
as.double(delta), MAXPTS = as.integer(x$maxpts), ABSEPS =
as.double(x$abseps), RELEPS = as.double(x$releps), error =
as.double(error), value = as.double(value), inform =
as.integer(inform), PACKAGE = "mvtnorm")
2: probval.GenzBretz(algorithm, n, df, lower, upper, infin, corr,
corrF, delta)
3: probval(algorithm, n, df, lower, upper, infin, corr, corrF, delta)
4: mvt(lower = lower, upper = upper, df = 0, corr = corr, delta =
mean, algorithm = algorithm, ...)
5: pmvnorm(lower = low, upper = upp, mean = args$mean, corr =
args$corr, sigma = args$sigma, algorithm = algorithm)
6: f(upper, ...)
7: uniroot(pfct, interval = interval)
8: qmvnorm(0.95, sigma = diag(2), tail = "both")
Good luck and thanks for all the great work.
Bill
--
William Revelle http://personality-project.org/revelle.html
Professor http://personality-project.org
Department of Psychology http://www.wcas.northwestern.edu/psych/
> Northwestern University http://www.northwestern.edu/
Use R for psychology http://personality-project.org/r
It is 6 minutes to midnight http://www.thebulletin.org
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