Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread DePaolis, Fernando
�well�here it goes again�it failed just now. This is the message I get when I try to run R from the command line on my mac fernandodepaolis@MacBook-Pro-2 ~ % R R version 4.3.0 (2023-04-21) -- "Already Tomorrow" Copyright (C) 2023 The R Foundation for Statistical Computing Platform:

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread DePaolis, Fernando
This is what I got when trying to run R from the console R version 4.3.0 (2023-04-21) -- "Already Tomorrow" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread Keith Bierman
On Thu, Jun 8, 2023 at 10:43 AM DePaolis, Fernando wrote: > This is what I get after the current failure, where neither R.app nor the > call from the command line work. > > > fernandodepaolis@MacBook-Pro-2 ~ % ls -l `which R` > > lrwxr-xr-x 1 root admin 47 Jun 5 10:23 /usr/local/bin/R -> >

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread John Helly via R-SIG-Mac
Not clear why there is a symbolic link.  Maybe try using the fullpath name to invoke R and see if that works.  It seems to me that 'sometimes', on OSX, some symbolic links behave oddly.  This may be related to the Privacy/Security settings but I don't have any clear understanding of what's

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread DePaolis, Fernando
This is what I get after the current failure, where neither R.app nor the call from the command line work. fernandodepaolis@MacBook-Pro-2 ~ % ls -l `which R` lrwxr-xr-x 1 root admin 47 Jun 5 10:23 /usr/local/bin/R -> /Library/Frameworks/R.framework/Resources/bin/R

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread David Winsemius
On 6/8/23 09:33, DePaolis, Fernando wrote: �well�here it goes again�it failed just now. This is the message I get when I try to run R from the command line on my mac You were advised to try using Disk Utility / First Aid. Have you done so yet?  (You are getting intermittent errors

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread Simon Urbanek
Fernando, that looks like something is deleting files on your disk - that sounds pretty bad. I would probably recommend re-installing a fresh macOS as you may have some malware (or over-eager anti-virus or corporate software?) on your machine. Given that R works after installation it really

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread Duncan Murdoch
The symbolic link is the standard way R is installed on a Mac. It's installed as a "framework", but the symlink in /usr/local/bin/R makes Unix-like tools see it as a standard program, which is what you want from the terminal. The warnings and errors Fernando was seeing, like package

Re: [R-SIG-Mac] Serious problem with R on macOS

2023-06-08 Thread peter dalgaard
Yes, this is consistent with the fact that R starts for you. Some other files seem to have gone missing though, notably the datasets and compiler package, so that R does not get very far before givinng up the ghost. The pattern of recently created files disappearing is worrying, but not likely