Re: [R-SIG-Mac] install.packages on '.tar.gz' fails

2012-08-15 Thread Michael Donohue
> I guess that the problem is that the .tar.gz file is . wait for it . > not a binary package for OS X. Those usually have .tgz extension, where as > .tar.gz files are usually source packages. > > You might try type="source" in install.packages. Thanks, type="source", does work; though

Re: [R-SIG-Mac] install.packages on '.tar.gz' fails

2012-08-15 Thread peter dalgaard
On Aug 16, 2012, at 00:29 , Michael Donohue wrote: > After updating to R 2.15.1 on OS X 10.8, I am seeing: > >> install.packages("nlme_3.1-104.tar.gz", repos = NULL) > Error: file ‘nlme_3.1-104.tar.gz’ is not an OS X binary package > > R CMD INSTALL is working fine, but I'm curious if anyone is

[R-SIG-Mac] install.packages on '.tar.gz' fails

2012-08-15 Thread Michael Donohue
After updating to R 2.15.1 on OS X 10.8, I am seeing: > install.packages("nlme_3.1-104.tar.gz", repos = NULL) Error: file ‘nlme_3.1-104.tar.gz’ is not an OS X binary package R CMD INSTALL is working fine, but I'm curious if anyone is having the same issue. Thanks, Mike ___

Re: [R-SIG-Mac] R 2.15.1 installer with signature (for Mountain Lion)

2012-08-15 Thread Federico Calboli
On 15 Aug 2012, at 14:26, Simon Urbanek wrote: > On Aug 15, 2012, at 5:28 AM, Berend Hasselman wrote: > >> To be completely sure: for ML I only have to install >> gfortran-lion-5666-3.pkg (from r.research.att.com) and Xcode + CLI tools? > > No, the "regular" Fortran from the top of the page

Re: [R-SIG-Mac] R 2.15.1 installer with signature (for Mountain Lion)

2012-08-15 Thread Simon Urbanek
On Aug 15, 2012, at 5:28 AM, Berend Hasselman wrote: > To be completely sure: for ML I only have to install > gfortran-lion-5666-3.pkg (from r.research.att.com) and Xcode + CLI tools? No, the "regular" Fortran from the top of the page or from CRAN - there is no Xcode add-on. Cheers, Simon _

Re: [R-SIG-Mac] R 2.15.1 installer with signature (for Mountain Lion)

2012-08-15 Thread Berend Hasselman
On 14-08-2012, at 22:39, Simon Urbanek wrote: > On Aug 14, 2012, at 3:49 PM, Berend Hasselman wrote: > >> On 14-08-2012, at 20:10, Simon Urbanek wrote: >> >>> Mountain Lion has been around for a few days and, interestingly, so far no >>> one has complained here, but the default privacy settin

Re: [R-SIG-Mac] R and Valgrind hangs on Snow Leopard

2012-08-15 Thread Prof Brian Ripley
Erika tracked this down to a known issue with valgrind and (C-level) system calls. See https://bugs.kde.org/show_bug.cgi?id=301281 I've added a workaround in R-patched/R-devel: set the environment variable R_OSX_VALGRIND (to anything), preferably before starting the session but I guess it wou