I'll file a bug report from memory. On Tue, May 18, 2021 at 12:46 AM Simon Urbanek <simon.urba...@r-project.org> wrote:
> Has anyone reported this bug at bugs.R-project.org? Quick search doesn't > yield anything - Peter can you post the reference, please, if you reported > it there? Since this is not a Mac-specific issue that's where should go if > it is to be fixed. > > Cheers, > Simon > > > > On May 18, 2021, at 12:32 AM, Kasper Daniel Hansen < > kasperdanielhan...@gmail.com> wrote: > > > > This bug is still present in the R-4.1. > > > > Best, > > Kasper > > > > On Fri, Sep 28, 2018 at 8:02 PM Peter Langfelder < > peter.langfel...@gmail.com> > > wrote: > > > >> For what it's worth, the same bug is present on linux when compiling R > >> with a custom BLAS (either ATLAS or OpenBLAS). The directory needs to > >> be made by hand first. I beleive I have reported this some time ago > >> but no action was taken. Compiling R with R internal BLAS does not > >> results in the error. > >> > >> Peter > >> On Fri, Sep 28, 2018 at 10:52 AM Kasper Daniel Hansen > >> <kasperdanielhan...@gmail.com> wrote: > >>> > >>> I am trying to compile and install R under High Sierra with Accelerate > >> BLAS > >>> but with R lapack. > >>> > >>> My relevant configure call is --with-blas="-framework Accelerate" but > >>> omitting --with-lapack. Full call is pasted at the end of this email > >>> > >>> I can do > >>> make > >>> make check > >>> but make install fails with > >>> > >>> make[2]: Nothing to be done for `install'. > >>> /usr/local/clang6/bin/clang -I. -I../../src/include > >>> -I../../../R-3.5.x-src/src/include -I/opt/X11/include > >> -I/usr/local/include > >>> -DHAVE_CONFIG_H -Wall -mtune=native -g -O2 -L/usr/local/clang6/lib > >>> -L/usr/local/lib -L/usr/local/opt/tcl-tk/lib > >>> -DR_HOME='"/usr/local/R/R-3.5.x/lib/R"' \ > >>> -o Rscript ../../../R-3.5.x-src/src/unix/Rscript.c > >>> mkdir /usr/local/R/R-3.5.x/lib/R/bin/exec > >>> mkdir /usr/local/R/R-3.5.x/lib/R/modules > >>> cp: /usr/local/R/R-3.5.x/lib/R/lib/libRlapack.dylib: No such file or > >>> directory > >>> make[3]: *** [install] Error 1 > >>> make[2]: *** [install] Error 1 > >>> make[1]: *** [install] Error 1 > >>> make: *** [install] Error 1 > >>> > >>> I manually verified that libRlapack.dylib had been build in the > building > >>> directory's "lib". I then just did > >>> > >>> sudo mkdir /usr/local/R/R-3.5.x/lib/R/lib > >>> > >>> (my installation directory is /usr/local/R/R-3.5.x) and redid make > >> install > >>> which now worked. I get > >>> > >>> $ ls /usr/local/R/R-3.5.x/lib/R/lib > >>> libRlapack.dylib > >>> > >>> My _guess_ is that since I am using R's lapack and system BLAS that the > >>> RHOME/lib directory does not get created. > >>> > >>> Btw., this might be a bad idea (happy to hear about this) but the > >>> installation should work since I can do make check > >>> > >>> Kasper > >>> > >>> configure > >>> > >>> ../${SRCDIR}/configure SHELL='/bin/bash' \ > >>> --prefix=/usr/local/R/R-${R_VERSION} --disable-R-framework\ > >>> CC="/usr/local/clang6/bin/clang" \ > >>> CXX="/usr/local/clang6/bin/clang++" \ > >>> F77="/usr/local/gfortran/bin/gfortran" \ > >>> FC="$F77" \ > >>> OBJC="clang" \ > >>> CFLAGS="-Wall -mtune=native -g -O2" \ > >>> CXXFLAGS="-Wall -mtune=natuve -g -O2" \ > >>> OBJCFLAGS="-Wall -mtune=native -g -O2 -fobjc-exceptions" \ > >>> F77FLAGS="-Wall -g -O2 -mtune=generic" \ > >>> FCFLAGS="$F77FLAGS" \ > >>> FLIBS="-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 > >>> -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm" \ > >>> LDFLAGS="-L/usr/local/clang6/lib -L/usr/local/lib" \ > >>> DYLD_FALLBACK_LIBRARY_PATH="/usr/local/clang6/lib:/usr/local/lib" \ > >>> > >>> > >> > PKG_CONFIG_PATH="/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/lib/pkgconfig" > >>> \ > >>> JAVA_HOME="/System/Library/Frameworks/JavaVM.framework/Home" \ > >>> JAVA_CPPFLAGS="-I/System/Library/Frameworks/JavaVM.framework/Headers" > \ > >>> JAVA_LD_LIBRARY_PATH="" \ > >>> JAVA_LIBS="-framework JavaVM" \ > >>> --enable-memory-profiling\ > >>> --x-includes=/opt/X11/include --x-libraries=/opt/X11/lib\ > >>> -with-tcltk=/usr/local/opt/tcl-tk/lib\ > >>> --with-blas="-framework Accelerate" | tee ../configure-${R_VERSION} > >>> > >>> [[alternative HTML version deleted]] > >>> > >>> _______________________________________________ > >>> R-SIG-Mac mailing list > >>> R-SIG-Mac@r-project.org > >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >> > > > > > > -- > > Best, > > Kasper > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-SIG-Mac mailing list > > R-SIG-Mac@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > > > -- Best, Kasper [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac