[R-SIG-Mac] odd problem building gmp from source

Hi, I chose to make a minor edit to the R-source matrixz.R in the gmp package (not to be confused with the GNU gmp library which it calls). On my Intel iMac at work, running OSX 10.6.4, it compiled just fine. for reference, that Mac has: %gcc -version i686-apple-darwin10-gcc-4.2.1: no input

[R-SIG-Mac] followup: my problems with gmp and gnu MP

Well, I finally found a version of gnuMP library that plays nicely with the R-gmp package and with my OSX 10.5.8 iMac. I loaded the gmp-4.3.1 tarball from att.com, per Simon's suggestion and all is well. I have to admit I'm not sure what exactly solved the problems I'd been having, but now my

Re: [R-SIG-Mac] packages failed to load

Just wanted to mention that I saw the same behavior with a package or two, and found the same workaround (copying libs to the 2.12 tree). Carl quote Message: 4 Date: Tue, 24 May 2011 16:32:41 +1000 From: Ian Reeve ire...@une.edu.au To: r-sig-mac@r-project.org r-sig-mac@r-project.org Subject:

[R-SIG-Mac] incomplete final line?

Just installed R2.14.0 . Sourcing just about any existing .r file gives me Warning message: In readLines(file) : incomplete final line found on [file name] Any ideas? thanks Carl -- Sent from my Cray XK6 Pendeo-navem mei anguillae plena est. ___

Re: [R-SIG-Mac] quartz.save tilde

Just to help him out, here's the error message I get, which pretty clearly indicates that one of the subfunctions does not parse a tilde (my working directory is /users/cgw/rgames) . Rgames quartz.save('~/downloads/foo.png') Error in dev.off(eval.parent(oc)) : QuartzBitmap_Output - unable

Re: [R-SIG-Mac] Block commenting - I found it

Many thanks for this explanation. And, yes, I feel like an idiot for not having investigated the Edit Menu. Carl On 2/2/12 9:42 AM, Hans-Jörg Bibiko wrote: On 2 Feb 2012, at 15:29, Carl Witthoft wrote: A little hacking later: CMD-' will apply # to each line, CMD-OPT-' will remove them

[R-SIG-Mac] OT Re:haxies and injection

While I can understand the frustration and confusion caused by DefaultFolderX not playing nice with R and MountainLion, I would like to point out that many if not all of us use an awful lot of OSX apps that are not R. Default Folder is, and has been since its inception, a spectacularly

[R-SIG-Mac] arguments to dev.new()

Hi, the WindowsOS - specific command windows() accepts an argument restoreConsole , which, when set to TRUE, returns focus to the console window after opening a new graphics device. The help file for dev.new() only says '... arguments to be passed to the device selected.' Is there an

[R-SIG-Mac] feature request: editor match brackets

Yes, I know about SHIFT-CTRL-B but that's ugly-ish. What I'd like to request is a automatic paired-bracket color highlighting in a manner similar to what Notepad++ does (which, if you haven't used it, colors a bracket next to the cursor and its matching pair). While it's nice to get that

[R-SIG-Mac] OpenFile Dialog hangs

This just started out of the blue: If I select, say, Open Recent and pick a file from the list, the file opens just fine. But if I select Open, then the dialog box opens, but the file list never gets filled in, I get the spinning beach ball, and never recover. I took the precaution of

Re: [R-SIG-Mac] OpenFile hang; fixed not solved

Pursuant to my last post: I tracked down and deleted all the following support files, all of which are in ~/Library/Preferences org.R-project.R copy.plist org.R-project.R.LSSharedFileList.plist org.R-project.R.plist org.R-project.R.savedState R now works correctly. I don't know which of

[R-SIG-Mac] corrupted plist file again

Hi, I got the same corruption problem again that causes a spinning beachball hang when I try to open a file via the Open dialog window. This time I traced it down to a specific plist file, and have posted the bad file to my GitHub account:

Re: [R-SIG-Mac] corrupted plist file again

to the bad location. Is there anything you can think of that would cause volume access issues on your system? (network mounts, virutal disks, etc.) Cheers, Simon On Dec 23, 2014, at 10:07 AM, Carl Witthoft c...@witthoft.com wrote: Hi, I got the same corruption problem again that causes a spinning

[R-SIG-Mac] hangs under Yosemite redux

Back to that question of the gui hanging at commands like Save As I brought up a few weeks back. Someone posted a similar question to SO and someone else posted the following claim: Apparently, this is a bug in R's GUI. Some OS X features/libraries that used to be in place in earlier

[R-SIG-Mac] Still have hangs on Open Dialog Box

I thought this problem had gone away, but it's still hitting me. Yosemite on a dual-core iMac, R 3.1.2 GUI 1.65 Mavericks build (6833). I've verified Permissions and Disk, using DiskUtility. What happens is: I select Open from the menu to try to open a new file inside R, and I get the

Re: [R-SIG-Mac] hangs on Open Dialog

this is desired behavior, to recover any lost work, but it's a bit unnerving. At the very least, can you advise if there's a config file somewhere that I could delete to avoid this recovery mode? -- Message: 4 Date: Mon, 12 Jan 2015 17:20:03 -0500 From: Carl Witthoft

Re: [R-SIG-Mac] Help page key bindings

May I suggest an alternative? Since MacOS allows you to bind the keystroke of your choice to any menu item (on an app-specific basis), if the help/forwards and help/backwards were added to a menu, then everyone could set whatever bindings they prefer. -- Carl Witthoft c...@witthoft.com

[R-SIG-Mac] R vs. Microsoft R-Open updates?

apps and libraries by trying to keep both R and MRO available on my (Yosemite) machine? -- Carl Witthoft c...@witthoft.com resume: https://app.box.com/WitthoftResume ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

[R-SIG-Mac] Transitioning from Mac to LInux?

source, getting compatible compilers, and so on. What have some of you 'power R users' discovered when/if you tried to build , or incorporate Bioconductor or other repository's packages under Linux? -- Carl Witthoft c...@witthoft.com resume: https://app.box.com/file/498153801347

Re: [R-SIG-Mac] noob asked for help

, 2020, at 4:31 PM, Mike Feher wrote: Greetings, As I’m getting familiar with R, I have some basic questions that I thought of to shoot to useRs: [snip] -- Carl Witthoft c...@witthoft.com resume: https://app.box.com/file/498153801347 ___ R-SIG-Mac

Re: [R-SIG-Mac] svn tarball

Dumb question from someone who hasn't done any building in quite a while: recommended director to place the svn executable? thanks Carl On 8/26/20 6:00 AM, r-sig-mac-requ...@r-project.org wrote: 1. svn now available from the tools (Simon Urbanek) ntent-Type: text/plain;

Re: [R-SIG-Mac] svn location

/usr/local, using the procedure outlined at the bottom of https://mac.r-project.org/libs/ but you should probably check with "tar tvfz" first. -pd On 26 Aug 2020, at 18:43 , Carl Witthoft wrote: Dumb question from someone who hasn't done any building in quite a while: r

[R-SIG-Mac] Editor beginning-of-line-chomp?

I've tried it with "show line numbers" preference set to ON and to OFF; same problem. I'm running Catalina, R7849Debug but saw the same thing with previous release versions. -- Carl Witthoft c...@witthoft.com resume: https://app.box.com/file/498153801347 ___

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Carl Witthoft c...@witthoft.com resume: https://app.box.com/file/498153801347 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.or

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

Hi, here's my sample R 10 dump: Sampling process 16681 for 10 seconds with 1 millisecond of run time between samples Sampling completed, processing symbols... Sample analysis of process 16681 written to file /tmp/R_2020-06-28_170339_imcz.sample.txt Analysis of sampling R (pid 16681) every 1

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

gt;> rm ~/Library/Preferences/org.R-project.R.plist >> >> Thanks, >> Simon >> >> >> >>> On Jun 8, 2020, at 10:22 AM, Brandon Hurr mailto:brandon.h...@gmail.com>> >> wrote: >>> &

Re: [R-SIG-Mac] Problem with CHECK --as-cran on Catalina

ce archive rather than the in-place source you have been editing. He was confirming that you are making that file and specifying it when checking. On June 6, 2020 11:59:24 AM PDT, Carl Witthoft wrote: I plead ignorance here: I don't see an option to create .tgz . The R CMD BUILD --help just l

[R-SIG-Mac] Can't open files in 4.0 or 4.01

, or uninstall, to at least get back to where I was? Right now I'm basically DIW. -- Carl Witthoft c...@witthoft.com resume: https://app.box.com/file/498153801347 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

and it crashes every time I try to open a .R file (crashlog https://paste.sr.ht/~hrbrmstr/9899f3a7f3c1724cc952b935c3fc39a47cac88ac) On Jun 7, 2020, at 16:22, Carl Witthoft wrote: Hi, 2 weeks ago I installed R 4.0 on my new Catalina machine. Things seemed to be working fine. Today I installed R 4.0

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

I’s editor. Perhaps it has got worse with the newer builds? On Sun, Jun 7, 2020 at 15:16 Carl Witthoft wrote: I'm not sure what to look for in the Reports sections of Console.app, but I did find this report of R exceeding a diagnostic limit of CPU usage, which most likely is related to one of

[R-SIG-Mac] Problem with CHECK --as-cran on Catalina

permissions, or some other called app? ) thanks -- Carl Witthoft c...@witthoft.com resume: https://app.box.com/file/498153801347 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Problem with CHECK --as-cran on Catalina

: ‘Author’ (running last R 4.0.1 beta before the release of R 4.0.1, latest Catalina beta AND R 4.0.0 on ubuntu) So, def something strange going on. On Sat, Jun 6, 2020 at 12:47 PM Carl Witthoft wrote: Hi, I recently upgraded to a new iMac w/ Catalina. Something really strange is

Re: [R-SIG-Mac] Problem with CHECK --as-cran on Catalina

, but that the check needs to be run on a source archive rather than the in-place source you have been editing. He was confirming that you are making that file and specifying it when checking. On June 6, 2020 11:59:24 AM PDT, Carl Witthoft wrote: I plead ignorance here: I don't see an option

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

more than one R script file in R-GUI’s editor. Perhaps it has got worse with the newer builds? On Sun, Jun 7, 2020 at 15:16 Carl Witthoft wrote: I'm not sure what to look for in the Reports sections of Console.app, but I did find this report of R exceeding a diagnostic limit of CPU usage,

[R-SIG-Mac] Strange "NOTE" when running R CMD CHECK

Hi, Has anyone seen this kind of NOTE when running R CMD CHECK --as-cran? (quote) * checking CRAN incoming feasibility ... NOTE Maintainer: ‘Carl Witthoft ’ New submission (end quote) I've seen this pop up since I switched to Catalina & R 4.X . I don't understand what it means or

[R-SIG-Mac] strange error message

Hi, this popped up in the middle of a long-running function. Is it anything to worry about? date-string, followed by R[56662:11921428] Error from CoreDragRequestrDrageCompleteMessage: -1850 regards, Carl -- Carl Witthoft personal: c...@witthoft.com The Witthoft Group, Consulting https

[R-SIG-Mac] spontaneous window switches?

Just wondering if anyone else has observed the R-GUI spontaneously changing which window is in front & has keyboard focus? I've even seen this happen when the gui is not the foreground application. R 4.2.2 GUI 1.79 High Sierra build (8160) MacOS 11.6.8 BigSur regards, Carl -- Carl Witt

[R-SIG-Mac] another R crash issue

This may be the fault of the `gmp` library, but posting to r-sig as well just in case. Mac OS 11.6.8 , R 4.2.2 Consider the following work: Rgames> foo <- NULL Rgames> rbind(foo,c(1,3)) [,1] [,2] [1,]13 Rgames> foo <- NULL Rgames> # rbind(foo,as.bigz(c(1,3))) ## instant crash

[R-SIG-Mac] problem with Rprof

Wondering if this is a hiccup in R-mac 4.2.1 (running under 11.6.8 Big Sur), or a bug in Rprof: If I try to set a very small time interval, >> Rprof(interval = 0.01) , R crashes. Crash report follows: Process: R [54439] Path:

Re: [R-SIG-Mac] [External] Re: problem with Rprof

How can you check anything if pthread functions fail? If a simple pthead_self() crashes then I don't see how you can do anything since we don't even know what thread we are, cannot call mutexes etc. Cheers, Simon -- Carl Witthoft personal: c...@witthoft.com The Witthoft

Re: [R-SIG-Mac] making rattle run

shake, rattle, and roll your data. rattle() Loading required package: RGtk2 Error in dyn.load(file, DLLpath = DLLpath, ...) For me just now R 4.2.2 successfully downloaded trying URL ' https://cran.wu.ac.at/bin/macosx/big-sur-arm64/contrib/4.2/rattle_5.5.1.tgz ' -- Carl Witthoft personal:

[R-SIG-Mac] problem with editor in R.app GUI

Hi, This is difficult to trigger consistently, which is why I'm not posting a file that causes it. Here's the issue: If I have a file with a function that has many bracket pairs , { } , e.g., for-loops or if - else constructs, and there's a mismatch somewhere in the code, I try to

Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 245, Issue 2

-- Subject: Digest Footer ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- End of R-SIG-Mac Digest, Vol 245, Issue 2 ***** -- Carl Witthoft personal: c...@witthoft.com The

Re: [R-SIG-Mac] 4.3.1 fails to load

ig-mac-requ...@r-project.org You can reach the person managing the list at r-sig-mac-ow...@r-project.org When replying, please edit your Subject line so it is more specific than "Re: Contents of R-SIG-Mac digest..." Today's Topics: 1. R 4.3.1 fails to load (Carl Witthoft)

[R-SIG-Mac] R 4.3.1 fails to load

))if (logical.return && !quietly) message(paste("Error:", msg), domain = NA)else stop(msg, call. = FALSE, domain = NA)}) 16: library(cgwtools) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R sa

Re: [R-SIG-Mac] R 4.3.1 fails to load

will this fix history #.Last <- function() if(interactive()) try(savehistory("~/Rgames/.Rhistory")) # change prompt options(prompt=paste(basename(getwd()),'> ',sep="")) cat("Gosh, boss, it's great to see you again.\n\n") print(fortunes::fortune()) On 7/22/23 1

[R-SIG-Mac] minor bugfix request in R Help window

Any chance the Help page can be configured so opening the search box doesn't cover up this stuff? Thanks Carl -- Carl Witthoft personal: c...@witthoft.com The Witthoft Group, Consulting https://witthoftgroup.weebly.com/ ___ R-SIG-Mac mailing list R-S

[R-SIG-Mac] R 4.4 crashes loading dplyr

brary\/Frameworks\/R.framework\/Versions\/4.4-x86_64\/Resources\/library\/vctrs\/libs\/vctrs.so", "name" : "vctrs.so" }, { "source" : "P", "arch" : "x86_64", "base" : 4937293824, "size" : 16384, &q

Re: [R-SIG-Mac] R 4.4 crashes loading dplyr

t; }, > > which suggests that you may be mixing incompatible binaries. Do you have > an older private library on your search path? That has bitten me at some > point. > > > - pd. > > > On 30 Apr 2024, at 00:55 , Carl Witthoft wrote: > > > > I apologize