Re: [R-SIG-Mac] R 4.3.1 fails on Mac OS X Sonoma

I can confirm that the behavior is the same on an Intel machine freshly upgraded to Sonoma with R 4.3.0 R.app GUI 1.79 (8238) aarch64-apple-darwin20 And it has been going on my M2 MBP R4.3.1 R.app GUI 1.79 (8238) aarch64-apple-darwin20 Does the team need any debug outputs or similar to understand

Re: [R-SIG-Mac] R-gui slow since last update

Yan It’s my understanding that it is important to use the debug version as it throws a lot more information for Simon et al into your logs to help solve the issue. Brandon On Wed, May 5, 2021 at 18:56 ALPEROVYCH Yan wrote: > Simon, > > I sampled the process of my test (the slowdown). I was

Re: [R-SIG-Mac] R for macOS Big Sur

It is my understanding that R is working via Rosetta 2 but I don’t have an M1 machine yet to test. See here: https://developer.r-project.org/Blog/public/2020/11/02/will-r-work-on-apple-silicon/index.html There is rapid movement on native ARM compatibility across all languages and software. Stay

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

ally depends on the document content - and > a selector that is apparently missing in Catalina. > > > > Thanks, > > Simon > > > > > >> On 29/06/2020, at 11:22 AM, Brandon Hurr > wrote: > >> > >> Simon. > >> Default

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

r segfault with an Apple > report so won't help immediately but will make it easier to pinpoint. Also > it should include debug symbols with line numbers and all that. Please post > the crash report. > > Thank you for your help, > Simon > > > > > On Jun 29, 2020,

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

Thanks Ben. I fired up R did a 20 second sample as I loaded files and it went into a hang. https://gist.github.com/bhive01/77ccd888da1ee74da12a5c91cfc3d727 Seems to have the symbols you describe. Is that more helpful? Brandon [[alternative HTML version deleted]]

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

ialog. > > > > R- version 4.01, and to my knowledge I didn't change anything of import > in my Mac's system or set of applications. > > > > If you can suggest a logfile or other tool I can pull info from to show > what happened, please do so. > > > > than

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

import > in my Mac's system or set of applications. > > If you can suggest a logfile or other tool I can pull info from to show > what happened, please do so. > > thanks > Carl > > On 6/24/20 5:32 PM, Brandon Hurr wrote: > > Simon, > > > > 1) Yes,

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

FAQ 10.17: > > https://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html#I-cannot-attach-debugger-to-R > > Thanks, > Simon > > > > > On Jun 9, 2020, at 2:39 AM, Brandon Hurr wrote: > > > > Simon, > > > > When I removed these two I did get a slightly

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

o file handling behaviour didn’t really change. > > Some places to remove to try if it has any effect: > > rm -rf ~/Library/Caches/org.R-project.R > rm ~/Library/Preferences/org.R-project.R.plist > > Thanks, > Simon > > > > > On Jun 8, 2020, at 10:22 AM, Brand

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

This sounds exactly like the issue I am still having when I run to open more than one R script file in R-GUI’s editor. Perhaps it has got worse with the newer builds? On Sun, Jun 7, 2020 at 15:16 Carl Witthoft wrote: > I'm not sure what to look for in the Reports sections of Console.app, > but

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

I jumped the gun on this. I rebooted and the pinwheel of death is back when I open a second file in the editor. Bummer. On Sat, May 23, 2020 at 11:31 AM Brandon Hurr wrote: > Kevin had a suggestion that I toggle disk access in the Security settings, > building on Bob's original comment t

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

interaction … > > Cheers, > Simon > > > > > On May 21, 2020, at 10:58 AM, Brandon Hurr > wrote: > > > > I just want to add that this is still happening. The size of the > > script seems to be irrelevant (10s of lines). If you double click > > another .

[R-SIG-Mac] R-GUI Window Not Stealing Focus after Using Mission Control.

Simon I mentioned this in 2016 at UseR!, but haven't followed through on my offer to show you what I mean until today. I use Mission Control via "Hot Corners" so I can flip between programs quickly. For a long time I've had this issue where if I am using R-GUI and use Mission Control, R doesn't

Re: [R-SIG-Mac] R-GUI Editor Window Offset

- if you use touch-pan for the text the background has suddenly > "holes" that you an see through to the windows underneath... > > Thanks, > Simon > > > > On May 21, 2020, at 11:13 AM, Brandon Hurr wrote: > > > > Simon, > > > >

Re: [R-SIG-Mac] R-GUI Editor Window Offset

pparently loading some file, so is this by drang-drop via > Open, via restore, …? > > Thanks, > Simon > > > > > On May 21, 2020, at 10:53 AM, Brandon Hurr wrote: > > > > When loading R-GUI I'm getting this weird offset where the editor > > window is

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

is missing (4000 lines of it). B On Fri, May 1, 2020 at 6:48 PM Brandon Hurr wrote: > > Thanks Bob. > > I did this and it did not fix it sadly. > I downloaded the Debug version of R-GUI and captured the following > after clicking on the same file (which did cause it to crash agai

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

tried it; I > generally don't use R.app) > > On Fri, May 1, 2020 at 4:54 PM Brandon Hurr wrote: > > > > I'm going to add to the pile on this one. It's hard to nail down > > though. I was able to load Hiroshi's test.R script after loading up > > R-GUI 7827 and just n

Re: [R-SIG-Mac] R.app GUI 1.71 (7827) crashes on Catalina

I'm going to add to the pile on this one. It's hard to nail down though. I was able to load Hiroshi's test.R script after loading up R-GUI 7827 and just now 7832. I loaded it from multiple directories by clicking on it. That said, I've been having many issues locking up R-GUI on my 2019 MBAir

Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 180, Issue 5

A newish shortcut also makes this easier. CMD + Shift + . This toggles hidden files without using terminal. > 2) My approach to managing my invisible files in the MacOS is to make thm > visible with this at a Terminal session: > > defaults write com.apple.finder AppleShowAllFiles YES >

Re: [R-SIG-Mac] Error resizing a plot window: Error in UseMethod("depth") :

Tim, I've run the example code on the page below and resized the plots with no errors. https://cran.r-project.org/web/packages/cowplot/vignettes/plot_grid.html It may have something to do with running High Sierra, or the specific code/data you are using. Could you post a reproducible example?

Re: [R-SIG-Mac] rJava stops loading since I upgraded R to 3.4.0

xcode-select --install And see if you have the command line tools installed. Brandon On Wed, May 24, 2017 at 8:19 AM, David Winsemius wrote: > > > On May 24, 2017, at 7:40 AM, Christofer Bogaso < > bogaso.christo...@gmail.com> wrote: > > > > Hi, > > > > I have

Re: [R-SIG-Mac] R 3.4.0 problem

The key to understanding your current issue is the following lines in your output. checking for __gmpz_ui_sub in -lgmp... no configure: error: GNU MP not found, or not 4.1.4 or up, see http://gmplib.org You need to visit that website and install GMP. The R `gmp` package requires the GMP library

Re: [R-SIG-Mac] OSX Sierra, R crash when loading library WGCNA

Billie, I'm not having issues loading WGCNA on my iMac. macOS Sierra 10.12.4 (16E195). Entire session below: R version 3.3.3 (2017-03-06) -- "Another Canoe" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin13.4.0 (64-bit) R is free software and comes

Re: [R-SIG-Mac] Serious R problem

If you hit escape you can continue without consequences. There's been a lot of talk on the forum about fixes and it was my impression that there was a fix released, but I'm not 100% certain. If you wipe your app history and recent files it seems to be ok temporarily. I have an older version of

Re: [R-SIG-Mac] CONFIRMED - R.app crashes at startup on MacOS Sierra

Simon, I have been experiencing this error for quite some time. If I load a r script by double clicking it, it happens nearly 100% of the time. If I load R itself first then it doesn't happen. If I clear the "recent" files area it doesn't happen until I fill it again. The file opened seems

Re: [R-SIG-Mac] R segfault at startup, causing R crash

; cerror 0x7fff8cd41ae0 <+20>: retq Executable module set to "/Applications/R.app/Contents/MacOS/R". Architecture set to: x86_64h-apple-macosx. (lldb) c Process 2070 resuming On Sat, Nov 5, 2016 at 5:52 PM, Brandon Hurr <brandon.h...@gmail.com> wrote: > I

Re: [R-SIG-Mac] R segfault at startup, causing R crash

I have also had this issue since upgrading. Recently it's got so bad that I just hit escape and continue working while saving my script as often as I can remember in hopes that it doesn't freeze completely. I deleted my script history as mentioned and indeed it prevented it from coming up with

Re: [R-SIG-Mac] R 3.2.2 Hangs Reading Files in El Capitan [Solved]

nitude faster than strings > to load/save. > Cheers, > Simon > > >> On May 5, 2016, at 6:49 PM, Brandon Hurr <bhiv...@gmail.com> wrote: >> >> You might be interested in the speed wars that are happening in the >> file reading/writing space currently. >&

Re: [R-SIG-Mac] R 3.2.2 Hangs Reading Files in El Capitan [Solved]

You might be interested in the speed wars that are happening in the file reading/writing space currently. Matt Dowle/Arun Srinivasan's data.table and Hadley Wickham/Wes McKinney's Feather have made huge speed advances in reading/writing large datasets from disks (mostly csv). Data Table

Re: [R-SIG-Mac] Pasting Code in Editor has Wrong Colors

. On Mon, Mar 7, 2016 at 8:28 AM, Brandon Hurr <brandon.h...@gmail.com> wrote: > Simon, > > A follow up. On my system, "paste as plain text" does not fix the > color or font size issue when pasting. Below is my system information. > >> de

Re: [R-SIG-Mac] Pasting Code in Editor has Wrong Colors

ductName: Mac OS X ProductVersion: 10.11.3 BuildVersion: 15D21 Thanks, Brandon On Sun, Mar 6, 2016 at 9:01 PM, Brandon Hurr <brandon.h...@gmail.com> wrote: > Simon, > > Thanks for the shortcut keys. I'll definitely use them. > > As for your question about where it's coming

Re: [R-SIG-Mac] Pasting Code in Editor has Wrong Colors

window. It overrides colors, fonts, font sizes, until you save and reopen. Then everything is like if you had pasted as plain text. Thanks, Brandon On Sun, Mar 6, 2016 at 09:46 Simon Urbanek <simon.urba...@r-project.org> wrote: > > On Mar 4, 2016, at 12:10 PM, Brandon Hurr <brandon

[R-SIG-Mac] Pasting Code in Editor has Wrong Colors

As mentioned in the exchange with Frederico, I've been using Solarized Dark colors for the console and editor to hopefully make long days of coding easier on my eyes. The issue is when I paste code from a webpage or email it appears to revert to the original colors interspersed with the new

Re: [R-SIG-Mac] R gui monokai

use to Simon et al. It would be an attractive option to have though. B On Fri, Mar 4, 2016 at 8:03 AM, Federico Calboli <federico.calb...@helsinki.fi> wrote: > >> On 4 Mar 2016, at 17:59, Brandon Hurr <brandon.h...@gmail.com> wrote: >> >> R... >> Preference

Re: [R-SIG-Mac] Issues with rJava on OS X El Capitan

Berend, I realize this is slightly off the goal of getting java working on your system, but it looks like you're using rJava to extract data from Excel files. Have you considered or tested using the readXL package instead? I believe it does not require rJava to work.

Re: [R-SIG-Mac] R crashes when using edit() or fix()

I'm having no issues loading that page. Check your firewall or try it through a tether or another connection and verify. B On Tue, Jan 26, 2016 at 11:30 David Winsemius wrote: > > > On Jan 26, 2016, at 10:38 AM, Simon Urbanek > wrote: > > >

[R-SIG-Mac] Color Profiles in R-gui and Editor

Hello, I primarily use R-gui as my main console and it's editor for editing my script files. It does what I need, but my eyes tire from staring at white all day. I've tried to change the colors manually through preferences to something like Solarized

Re: [R-SIG-Mac] Color Profiles in R-gui and Editor

Apologies, forget the comment about syntax highlighting. The request for an easier way to add/select color profiles for R-gui and its editor stands. On Tue, Nov 17, 2015 at 9:30 AM, Brandon Hurr <brandon.h...@gmail.com> wrote: > Hello, > > I primarily use R-gui as my main console

Re: [R-SIG-Mac] FastRWeb on El Capitan

Do you have some reproducible code. I updated to 10.11 this morning and things seem ok, but I don't use those components. On Thu, Oct 1, 2015 at 1:58 PM, Carl pfisterer via R-SIG-Mac < r-sig-mac@r-project.org> wrote: > I upgraded a test machine to OS X 10.11 but I seem to be having difficulty >

Re: [R-SIG-Mac] arguments lookup is disabled while R is busy

a reboot was in order? Sorry for the noise. Brandon On Fri, Aug 28, 2015 at 8:02 AM, Simon Urbanek simon.urba...@r-project.org wrote: On Aug 27, 2015, at 11:12 PM, Brandon Hurr brandon.h...@gmail.com wrote: At the time I wasn't doing anything. The editor window was open and the GUI window

Re: [R-SIG-Mac] arguments lookup is disabled while R is busy

Urbanek simon.urba...@r-project.org wrote: Yes, that is expected, since you need R to obtain those (it requires R code to run) and R is single-threaded, so you get all those hints only when R is not busy. Cheers, Simon On Aug 26, 2015, at 1:48 PM, Brandon Hurr brandon.h...@gmail.com wrote

Re: [R-SIG-Mac] Rmertrics-fPortfolio can't be installed on OS 10.10.4

Did you install Symphony first? Cannot find SYMPHONY libraries and headers. See https://projects.coin-or.org/SYMPHONY. On Tue, Aug 4, 2015 at 07:55 Josh C. Chien jcch...@me.com wrote: Hi Mac-R, Anyone know how to figure out this issue ? install.packages(fPortfolio) also installing the

Re: [R-SIG-Mac] Rmertrics-fPortfolio can't be installed on OS 10.10.4

4, 2015, at 10:57 PM, Brandon Hurr brandon.h...@gmail.com wrote: Did you install Symphony first? Cannot find SYMPHONY libraries and headers. See https://projects.coin-or.org/SYMPHONY. On Tue, Aug 4, 2015 at 07:55 Josh C. Chien jcch...@me.com wrote: Hi Mac-R, Anyone know how to figure out

Re: [R-SIG-Mac] Problems to install a package

On Wed, Jul 29, 2015 at 7:26 AM, David Winsemius dwinsem...@comcast.net wrote: install.packages(RMacoqui, repos=http://R-Forge.R-project.org;, type=source, dependencies=TRUE) I'm not sure if this is helpful, but I'm running 10.10.4 and had no issues installing from the source as David

Re: [R-SIG-Mac] Some library can't be installed on Mac OS Yosemite 10.10.3

You need to install symphony first. See links here: http://cran.r-project.org/web/packages/Rsymphony/index.html On Tue, Jun 23, 2015 at 18:00 Josh C. Chien jcch...@me.com wrote: Hi R-Mac, I got trouble about installation of some library which might use C/C++/Fortran code. Rmetrics-fPortfolio

Re: [R-SIG-Mac] cairo devices not working in 3.2.0

Noam, I've just recently upgraded too and everything works except cairo_png(). capabilities(cairo) cairo TRUE svg() cairo_png() Error: could not find function cairo_png cairo_pdf() sessionInfo() R version 3.2.0 (2015-04-16) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X

Re: [R-SIG-Mac] Compiler options for R binary

Simon. It's been a while since I've looked but are there precise instructions on how to implement your BTW? Brandon. On Thursday, November 20, 2014, Simon Urbanek simon.urba...@r-project.org wrote: On Nov 20, 2014, at 11:17 AM, Braun, Michael bra...@mail.smu.edu javascript:; wrote: I

Re: [R-SIG-Mac] Bug in R.app code editor

Duncan I could not replicate on my air, but I'm running Yosemite beta 2 and copied from Chrome 38.0.2125.24 beta (64-bit). http://imgur.com/oBCvqlK sessionInfo() R version 3.1.1 (2014-07-10) Platform: x86_64-apple-darwin13.1.0 (64-bit) locale: [1]

Re: [R-SIG-Mac] Strange behavior of R window when switching using Mission Control / Exposé

I can confirm this behavior on my mac since at least R 2.11.0, OS X 10.6.8 to 10.9.2. It's been driving me nuts. The window is actually in the front and you can type in it, but you can't see it until you do expose a second time or click on the window. On Tue, Apr 1, 2014 at 2:47 AM, Jimmy

Re: [R-SIG-Mac] Problems with Rcmdr via XQuartz on OSX Mavericks

Sounds a lot like what I've seen with imagej. Once it's in the background, it slows to a crawl. I'm certain it's mavericks power saving. Any idea how to disable it per app? On Friday, November 22, 2013, Simon Urbanek wrote: Like Peter said, this seems due to the aggressive power-saving in

Re: [R-SIG-Mac] R crashes on preferences screen

-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base Is there any other specific information that would help? Thanks, John On Wed, Nov 6, 2013 at 10:12 AM, Brandon Hurr bhiv...@gmail.com wrote: Robert, I never could reproduce

Re: [R-SIG-Mac] R crashes on preferences screen

I cannot reproduce on my mac mini (2011). OS X 10.8.5. R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base

Re: [R-SIG-Mac] edit command does not work as I would expect

If I had to guess it would be that your file isn't in the working directory. If you supply the entire file location does it work as expected? HTH B On Tue, Aug 13, 2013 at 3:29 PM, David Epstein david.epst...@warwick.ac.ukwrote: I tried using various versions of the 'edit' command. Here is an

Re: [R-SIG-Mac] Why do i get: Error: unexpected input in A-lm(GandW ~ Authocracy, Data) ?

A-lm(GandW ~ Authocracy*;*Data) On Sun, Nov 25, 2012 at 8:01 PM, Faradj Koliev farad...@gmail.com wrote: ; [[alternative HTML version deleted]] ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org

Re: [R-SIG-Mac] R console

10.8.1 (12B19) Kernel Version: Darwin 12.1.0 Boot Volume: AIR Boot Mode: Normal Computer Name: Brandon’s MacBook Air User Name: Brandon Hurr (bhurr) Secure Virtual Memory: Enabled Time since boot: 20:49 On Fri, Aug 24, 2012 at 3:51 PM, Weiwei Shi helprh

Re: [R-SIG-Mac] Unable to install packages car, faraway, mvtnorm

You need to install the packages before your script can load. http://cran.r-project.org/doc/manuals/R-admin.html#Installing-packages ?install.packages() B On Fri, Mar 16, 2012 at 17:35, Evan Chele Jones joneswha...@slingshot.co.nz wrote: I'm fairly new to R and I'm not sure that I am

Re: [R-SIG-Mac] Unable to install packages car, faraway, mvtnorm

-machttps://stat.ethz.ch/mailman/listinfo/r-sig-mac On Fri, Mar 16, 2012 at 17:42, Brandon Hurr bhiv...@gmail.com wrote: You need to install the packages before your script can load. http://cran.r-project.org/doc/manuals/R-admin.html#Installing-packages ?install.packages() B On Fri, Mar 16

Re: [R-SIG-Mac] problem with loading JGR

Funny enough I was trying the same thing today after reading the discussion in Baptiste's Physicists thread. I get a very similar error when I started it in R... require(deducer) Loading required package: deducer Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE,