Re: [R-SIG-Mac] R CMD …

2021-02-20 Thread Dr Eberhard W Lisse
wrote: > I see a lot of references to R CMD on the command line. Can I > assume > that the R in question is the R executable in Contents > MacOS within > R.app? > > Peter [...] -- Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist e...@lisse.na

Re: [R-SIG-Mac] [External] Re: [External] Re: [External] Re: [External] Please test R 4.0.4 RC

2021-02-13 Thread Dr Eberhard W Lisse
> > I did all this R_4.0.4 RC testing after updating to Big Sur 11.2.1. > > ____ > From: Dr Eberhard W Lisse > Sent: Saturday, February 13, 2021 4:44 PM > To: Duncan Murdoch; R-SIG-Mac; Richard M. Heiberger > Cc: e...@lisse.na >

Re: [R-SIG-Mac] Problem with read.table in my Mac. "No such file or directory"

2021-02-13 Thread Dr Eberhard W Lisse
space in a directory name? put the file in ~/Desktop and see what happens then. If it is a CSV make it moabsitechem.csv and see what that doesn. el — Sent from Dr Lisse’s iPhone On 13 Feb 2021, 22:29 +0200, Parkhurst, David F. , wrote: > I’m still having trouble with read.table, as follows

Re: [R-SIG-Mac] [External] Re: [External] Re: [External] Please test R 4.0.4 RC

2021-02-13 Thread Dr Eberhard W Lisse
-select —install > > I ran (in both cases, in a brand new *R* sessio n) > > > > > X11() > > xcrun: error: invalid active developer path > > (/Library/Developer/CommandLineTools), missing xcrun at: > > /Library/Developer/CommandLineTools/usr/bin/xcrun > >

Re: [R-SIG-Mac] [External] Please test R 4.0.4 RC

2021-02-13 Thread Dr Eberhard W Lisse
that has nothing to do with Xquartz but means you need to install the Command line tools sudo xcode-select —install — Sent from Dr Lisse’s iPhone On 13 Feb 2021, 06:13 +0200, Richard M. Heiberger , wrote: > Using the intel R_4.0.4RC on the Mac M1. > > Based on your recommendation I reinstalled

Re: [R-SIG-Mac] R for macOS Big Sur

2021-01-11 Thread Dr Eberhard W Lisse
I use the homebrew R for the Intel and then install.packages(), update.package() from scripts and  Rstudio’s Tools->. I don’t have an M1 (yet) but would be interested in seeing how that works on the M1. Probably this will pull the sources and hence I would be grateful to read about that.

Re: [R-SIG-Mac] Problem R with Big Sur

2021-01-05 Thread Dr Eberhard W Lisse
Aurélie This has been discussed here on the list recently and I think the short term fix is to use Rstudio or R from the command line. I am sure this will sort itself out over time. el On 2021-01-05 11:01 , Univ-Rouen wrote: > Dear all, > I have change my MacBook Pro since a few months and

Re: [R-SIG-Mac] INSTALL R 4.0.2

2020-12-03 Thread Dr Eberhard W Lisse
t radiant? > I downloaded the packages thank opened it but in Basics->Prob > calculator the layout is incomplete. I can only see the graphic, not > the data over it. You know why? > >> Il giorno 3 dic 2020, alle ore 13:41, Dr Eberhard W Lisse ha scritto: >> >>

Re: [R-SIG-Mac] INSTALL R 4.0.2

2020-12-03 Thread Dr Eberhard W Lisse
I’m texting just to have the link to download that version. > Really thankful, > Giuseppe Santangelo. > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Dr Eberhard W Lisse
ssue claims to be >>>>> resolved by >>>>> using the latest Xcode & SDK but that’s not likely to be a solution >>>>> for R >>>>> GUI (which I’m assuming you're using and where this error is coming >>>>> up). >>>>>

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Dr Eberhard W Lisse
clang --version el On 02/12/2020 16:15, Spencer Graves wrote: > What should I do to "make sure to have installed the latest version of > Apple's development environment, including version 12.0 of the compiler"? > > > Thanks, > Spencer Graves

Re: [R-SIG-Mac] Problems with R and Big Sur

2020-12-02 Thread Dr Eberhard W Lisse
ot a height of 32.00. This error will be > logged once per view in violation. > > and the computer becomes very slow. > > Can I do something to fix it, or will we have to wait for an R update? > > Thank you very much for your attention. > > Sincerely, > &g

Re: [R-SIG-Mac] Can't open files in 4.0 or 4.01

2020-06-08 Thread Dr Eberhard W Lisse
It sounds a little as if the R.app is somehow damaged. What do the commands ls -ls $(which R) ls -las $(which Rscript) issued from a terminal show? Mine show (abbreviated) [...] /usr/local/bin/R -> ../Cellar/r/4.0.0_1/bin/R [...] /usr/local/bin/Rscript ->

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-15 Thread Dr Eberhard W Lisse
48 Jan 13 17:42 a2ping -> > /usr/local/texlive/2016/bin/x86_64-darwin/a2ping > > > All had "2016". I'm inferring from your comments that if anything > I do calls any of those 451 operations like "a2ping", I will get "

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-13 Thread Dr Eberhard W Lisse
> > > Lisse's "UninstallPKG" might have been more graceful, but I > couldn't find the key to that padlock, so I used something that seems > more like boltcutters instead -- and it worked. > > > Thanks again, > Spencer Graves > > > On 2

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-13 Thread Dr Eberhard W Lisse
hat via several levels of indirection end up somewhere in > /usr/local/texlive). However, old installs may still have binaries or > links in /usr/local/bin. I would guess that a simple > > sudo rm /usr/local/bin/pdflatex > > could work (possibly remove some other *tex progra

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-13 Thread Dr Eberhard W Lisse
Ah, yes, brew install coreutils :-)-O Existing accounts using bash remain under bash when upgrading to Catalina. And bash remains available so all bash script will continue to run :-)-O el On 13/05/2020 15:44, Marc Schwartz wrote: > Hi, > > I will stand to be corrected, but from

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-13 Thread Dr Eberhard W Lisse
:/Library/Frameworks/Python.framework/Versions/3.5/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/usr/local/git/bin > > >       I do find "/Library/TeX/texbin/pdflatex" on my hard drive, but "which > pdflatex"

Re: [R-SIG-Mac] 4.0.0

2020-04-29 Thread Dr Eberhard W Lisse
For all it is worth, homebrew upgraded R to 4.0.0 on Catalina and I did notice that homebrew asked for an XCode Command Line Tools upgrade I then sourced as usual my package.R which installs the ones I use, and it did install a number of packages from source (which I assusme is becasue they

Re: [R-SIG-Mac] Graphic problem Rcmdr

2020-04-29 Thread Dr Eberhard W Lisse
g it ? > > > Thank you very much for your help, > > Best wishes, > > > JB > > > > _______ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > -- Dr. Eberhard W. L

Re: [R-SIG-Mac] MacTeX 2020 and TeX Live Utility (No Longer Included)

2020-04-28 Thread Dr Eberhard W Lisse
Rainer Put function tlcockpit { case "$(java -version 2>&1 | head -1)" in *"1.8"*) jar="tlcockpit-jdk8.jar" ;; *) jar="tlcockpit.jar" ;; esac exec java -jar $(kpsewhich --progname="tlcockpit" --format=texmfscripts "$jar") 2>&1 >/dev/null & } into ~/.aliases or

Re: [R-SIG-Mac] MacTeX 2020 and TeX Live Utility (No Longer Included)

2020-04-27 Thread Dr Eberhard W Lisse
g the TeX distribution contents, is no > longer included in the MacTeX distribution. [...] -- Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist e...@lisse.na / * | Telephone: +264 81 124 6733 (cell) PO Box 8421 Bachbrecht \ / If this email is

Re: [R-SIG-Mac] Homebrew

2020-04-02 Thread Dr Eberhard W Lisse
Rainer, I am definitively interested. But, as a disclaimer, I am an elderly Gynecologist only dabbling in R and a little in Perl :-)-O. el On 02/04/2020 12:43, Rainer M Krug wrote: > > >> On 2 Apr 2020, at 12:17, Duncan Murdoch >> wrote: >> >> On 02/04/2020

Re: [R-SIG-Mac] Homebrew

2020-04-02 Thread Dr Eberhard W Lisse
…, which can > cause inconsistencies. > > The installation is done without requiring root privileges, which is a > big advantage (as I see it). > > > > Cheers, > > Rainer [...] -- Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist e...@liss

[R-SIG-Mac] Homebrew

2020-04-02 Thread Dr Eberhard W Lisse
out how to make Homebrew pre/post install scripts to automate this :-)-O And, for the record, other than that, I can only recall one serious issue, when the openblas library got lost recently which was however fixed quite quickly. greetings, el On 02/04/2020 10:17, Dr Eberhard W Lisse wrote

Re: [R-SIG-Mac] Transitioning from Mac to LInux?

2020-04-02 Thread Dr Eberhard W Lisse
I do same, including Rstudio (Cask). Once in a while after major updates I need to reinstall all my extra packages, so I have written me a little script along the lines of #!/usr/local/bin/Rscript local({ r <- getOption("repos") r["CRAN"] <-

Re: [R-SIG-Mac] PACKAGES file missing

2020-02-12 Thread Dr Eberhard W Lisse
Ligges wrote: > > > On 12.02.2020 10:51, Dr Eberhard W Lisse wrote: [...] > For myself, I would not use RStudio as it does what you describe: Lots > of things I do not want to be done. So I typically never give advise > which editor or environment to use, as that is a matter o

Re: [R-SIG-Mac] PACKAGES file missing

2020-02-12 Thread Dr Eberhard W Lisse
causing install.packages() to fail, which forces installation > from source: > [...] > > Have I made som mistake or is this a real problem? > > Many thanks for any help. > > Best regards, > > Joel Jacobson [...] -- Dr. Eberhard W. Lisse \ / Obstetrici

Re: [R-SIG-Mac] Using R on MacOS Catalina.....

2020-01-28 Thread Dr Eberhard W Lisse
For me it usually had to resort to the latter when there were connectivity issues (more common in Namibia than in Potsdam :-)-O). And maybe once or twice when I wanted to try something special. It also has a 'cask' option with which it installs apps so I do brew install r brew cask install

Re: [R-SIG-Mac] Using R on MacOS Catalina.....

2020-01-28 Thread Dr Eberhard W Lisse
les for R via "make" - after them it breaks > the installation ☹ [...] -- Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist e...@lisse.na / * | Telephone: +264 81 124 6733 (cell) PO Box 8421

Re: [R-SIG-Mac] Using R on MacOS Catalina.....

2020-01-28 Thread Dr Eberhard W Lisse
have a nice day….. > > > > Herzlichst grüßt Sie das HPC - Team > > > > > > > > Matthias Krawutschke [...] -- Dr. Eberhard W. Lisse \ / Obstetrician & Gynaecologist e...@lisse.na

Re: [R-SIG-Mac] R-patched installers cannot be run on Catalina

2019-10-11 Thread Dr Eberhard W Lisse
> > Are there plans to notarize these builds of R? (can we be helpful in > making that happen?) > > Best, > Kevin > > ___ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listin

Re: [R-SIG-Mac] [External] Re: Xcode 10.2.1

2019-04-28 Thread Dr Eberhard W Lisse
Indeed. Thanks. el Sent from Dr Lisse's iPad mini 4 On 29 Apr 2019, 01:48 +0200, Bert Gunter , wrote: > ?installed.packages > > (Sometimes trying the obvious works) > > Bert Gunter > > "The trouble with having an open mind is that people keep coming along and > sticking things into it." > --

Re: [R-SIG-Mac] R 3.5.3 macOS binary not signed?

2019-03-14 Thread Dr Eberhard W Lisse
Thanks, > > Marc [...] -- Dr. Eberhard W. Lisse / Obstetrician & Gynaecologist (Saar) e...@lisse.na/ * | Telephone: +264 81 124 6733 (cell) PO Box 8421 / Bachbrecht, Namibia ;/ ___ R-SIG-Mac ma

Re: [R-SIG-Mac] R 3.5.3 macOS binary not signed?

2019-03-14 Thread Dr Eberhard W Lisse
on > > >> On Mar 14, 2019, at 8:43 AM, Dr Eberhard W Lisse wrote: >> >> Try from the commandline >> >> sudo spctl --master-disable >> >> and then install the package >> >> el ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R 3.5.3 macOS binary not signed?

2019-03-14 Thread Dr Eberhard W Lisse
Try from the commandline sudo spctl --master-disable and then install the package el Sent from Dr Lisse's iPad mini 4 On 14 Mar 2019, 21:18 +0900, Marc Schwartz via R-SIG-Mac , wrote: > Hi, > > I just tried to install the R 3.5.3 macOS binary from CRAN. > > The SHA hash matches what is on

Re: [R-SIG-Mac] Disable readline echo in R for mac GUI

2018-11-15 Thread Dr Eberhard W Lisse
On my Mojave iMac commandArgs() returns on RStudio [1] "RStudio" "--interactive" on Mac GUI [1] "R" "--no-save" "--no-restore-data" "--gui=aqua" and on R command line [1] "/Library/Frameworks/R.framework/Resources/bin/exec/R" so maybe test for that?