Re: [R-SIG-Mac] rlang and the new R version 4.1.0

2021-05-25 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Okay was able to find the link - https://www.r-bloggers.com/2020/04/updating-to-4-0-0-on-macos/ Also would suggest installing RSwitch (https://rud.is/rswitch/) so you can keep both versions and switch between the until you ar certain all the kinks are gone. -Roy > On May 25, 2021, at 1:28

Re: [R-SIG-Mac] rlang and the new R version 4.1.0

2021-05-25 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
When R4.0 came out, someone on R-Bloggers post a very nice to automate updating your packages from R3.6. I just used it to do my update from R4.0 to R4.1 - it works perfectly. I would include the script here, but since I don't have the exact reference I don't like posting someone else's

Re: [R-SIG-Mac] [External] tcltk on M1 mac?

2021-05-25 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Thanks. That is what I want to know. -Roy > On May 25, 2021, at 8:20 AM, Duncan Murdoch wrote: > > On 25/05/2021 10:44 a.m., Roy Mendelssohn - NOAA Federal via R-SIG-Mac wrote: >> I seem to remember a discussion not too long ago that the very latest >> version fo XQuart

Re: [R-SIG-Mac] [External] tcltk on M1 mac?

2021-05-25 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
I seem to remember a discussion not too long ago that the very latest version fo XQuartz did not install all the libraries needed by R, and to install the previous on instead (I hav XQuartz 2.7.11, the latest is 2.8.1). Is this still the case? Thanks, -Roy > On May 24, 2021, at 10:36 PM,

Re: [R-SIG-Mac] R 4.1 for my Mac M1 crashing on installing packages

2021-05-22 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Hi Simon: So perhaps the take-home message is that if you depend on that suite of packages, perhaps the time is not ripe to update to R4.1? Also wondering how this will affect CRAN checks for packages that have on of those packages as "Suggest" or "Depend"? Thanks, -Roy > On May 22, 2021,

Re: [R-SIG-Mac] sf installation problem under Mac OS 11 - Big Sur

2020-11-19 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Ditto on the thanks. Will also remind people that there were warnings that folks might want to hold off on upgrading to Big Sur because there might be hiccups, and to wait till it looked like most things were resolved. I imagine this is a huge amount of work. Graeful to all who are working

Re: [R-SIG-Mac] Apple Silicon aka M1 Macs

2020-11-17 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Thank to all who are working on this. Looks like a lot of work. Also looks like when and if R can run in native mode on the M1 it will be very fast. -Roy > On Nov 17, 2020, at 6:57 AM, Prof Brian Ripley wrote: > > Mine (a 8GB MBA) arrived today, so I have started doing some comparisons. >

Re: [R-SIG-Mac] Rstan compilation hangs misterisouly

2020-11-08 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Hi: While it is possible you will get the help you seek here, I think you would likely to get more help, and more knowledgeable help, on this more specialized issue, at the Stan Forum. https://discourse.mc-stan.org. I remember seeing in the summaries I get some issues with different

[R-SIG-Mac] Thanks

2020-11-03 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
https://developer.r-project.org/Blog/public/2020/11/02/will-r-work-on-apple-silicon/ It reads like a lot of work. Thanks for the efforts! -Roy ** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ** Roy

Re: [R-SIG-Mac] Installation Problems

2020-09-17 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
next sync, but you can use the Mac master in the meantime which > worked for me: > > install.packages(c("rpf", "statespacer", "tmap", > "workflows"),,"https://mac.R-project.org;) > > Cheers, > Simon > > > > >

[R-SIG-Mac] Installation Problems

2020-09-17 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Though what is shown below is from the RStudio repository, I have tried several others, including R-cloud. Is it just something on my end or are there problems. CRAN shows the versions trying to be installed. -Roy install.packages(c("rpf", "statespacer", "tmap", "workflows")) Installing

Re: [R-SIG-Mac] Packages with updated spatial libraries.

2020-06-22 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
I ran package update this morning, so in CRAN terms I should be up to date. Based on this email: https://stat.ethz.ch/pipermail/r-sig-mac/2020-June/013599.html I installed lwgeom rgdal rgeos sf from that repository. These are built with GEOS 3.8.1, GDAL 3.1.0, PROJ 6.3.2. It installed

Re: [R-SIG-Mac] Packages with updated spatial libraries.

2020-06-22 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
I installed the whole suite available through Prof. Ripley's efforts, and finally have gotten time to do extensive testing. I just ran into a problem with code that worked previously. It doesn't break all the mapping code, only some. The error I get is given below. And yes I realize that

Re: [R-SIG-Mac] Packages with updated spatial libraries.

2020-06-12 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
I will do the install sometime over the weekend, and test what I have (mainly the packages I have that use these). Today is kind of tis up (I mean I can do the install easily enough, just no time to do any testing). Thanks, -Roy > On Jun 12, 2020, at 7:17 AM, Roger Bivand wrote: > >

Re: [R-SIG-Mac] R4.0.0 and Makevars

2020-05-26 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
r-project.org/openmp/ > > Best, > > JJB > > On 5/26/20, 2:00 PM, "R-SIG-Mac on behalf of Roy Mendelssohn - NOAA Federal > via R-SIG-Mac" r-sig-mac@r-project.org> wrote: > >Hi All: > >Awhile back Simon posted what if anything should be in

[R-SIG-Mac] R4.0.0 and Makevars

2020-05-26 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Hi All: Awhile back Simon posted what if anything should be in your Makevars for R4.0.0 if you needed to compile packages from source. I thought I had saved that email but i can't find it, and I just looked at the archives and can't find it either. If anyone has that info I would appreciate

Re: [R-SIG-Mac] R 3.6.2 installer / Catalina / Notarization

2019-12-13 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
$!$!$$$@!+!. So I went there, still saw old version. Cleared cache, went again, still saw old version. Cleared cache again, went there, saw new version. Grrr. The kind of small things that drive me nuts. Thanks, -Roy > On Dec 13, 2019, at 9:55 AM, Bob Rudis wrote: > > It's

Re: [R-SIG-Mac] R 3.6.2 installer / Catalina / Notarization

2019-12-13 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Yes but I don't see the installer on the CRAN site, I only see the installer for 3.6.1. Am I missing something? Not a complaint, just don't see it? I did clear my caches. Thanks, -Roy > On Dec 13, 2019, at 9:51 AM, Bob Rudis wrote: > > 3.6.2 was released on the 12th and it's been on

Re: [R-SIG-Mac] Problem generating an SVG file from a CSV file on the Mac - updated with test script and test data

2019-08-20 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Looks similar to mine. I am just guessing here, but did you upgrade to 3.6 and not reinstall all of your packages? Or have you checked if you have something in .Rprofile or the like that is setting the path to something that conflicts? -Roy > On Aug 20, 2019, at 8:20 PM, Richard Fuhr

Re: [R-SIG-Mac] Problem generating an SVG file from a CSV file on the Mac - updated with test script and test data

2019-08-20 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Worked on my machine. I think you need to give more info, including what version of the OS you are running, and from within R the result of 'sessionInfo()', also what happens if you run it from within R, rather than from RScript. HTH, -Roy > On Aug 20, 2019, at 7:27 PM, Richard Fuhr

Re: [R-SIG-Mac] Xcode 10.3 and header flles

2019-07-24 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
24, 2019, at 10:54 AM, Bryan Hanson wrote: >>>> >>>> If it helps troubleshoot, I updated more or less on the same timeline as >>>> Roy did and had the same problems Roy had, and Roy’s most recent response >>>> below gives the same response on my Mac. R

Re: [R-SIG-Mac] Xcode 10.3 and header flles

2019-07-24 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
gives the same response on my Mac. Roy’s fix * fixed things for me. Bryan > > * open > /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg > >> On Jul 24, 2019, at 10:46 AM, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >> wrote: >>

Re: [R-SIG-Mac] Xcode 10.3 and header flles

2019-07-24 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
for me. Bryan >> >> * open >> /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg >> >>> On Jul 24, 2019, at 10:46 AM, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >>> wrote: >>> >>> Hi Simon: >>> >>>> ls /L

Re: [R-SIG-Mac] Xcode 10.3 and header flles

2019-07-24 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
y. > > Thanks, > Simon > > > >> On Jul 23, 2019, at 14:50, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >> wrote: >> >> Hi Simon: >> >> I am using CRAN release, recommended CRAN compilers. Yesterday morning one >> updated

Re: [R-SIG-Mac] Xcode 10.3 and header flles

2019-07-23 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
>> On Jul 23, 2019, at 12:47 PM, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >> wrote: >> >> If like me you updated to Xcode 10.3, in Apple's infinite wisdom the >> install again wipes out the header files. So if you did the update and >>

[R-SIG-Mac] Xcode 10.3 and header flles

2019-07-23 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
If like me you updated to Xcode 10.3, in Apple's infinite wisdom the install again wipes out the header files. So if you did the update and install from source remember to re-install the headers: > open > /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg

Re: [R-SIG-Mac] clang: error: unsupported option '-fopenmp'

2019-05-06 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Um you didn't mention what version of the compiler and where you downloaded it from. The last couple of versions available through the tools links have supported OpenMP. I have compiled that package, but I am using R 3.5.3 and clang 6, I believe R 3.6.0 uses clang 7, but that also supports

Re: [R-SIG-Mac] [External] Re: Xcode 10.2.1

2019-04-28 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
nek > wrote: > > Yes, I did, if you used R 3.6.0 there would be no issue (as long as you have > command line tools installed). > > Cheers, > Simon > > >> On Apr 24, 2019, at 12:06, Roy Mendelssohn - NOAA Federal via R-SIG-Mac >> wrote: >> >> Yes

Re: [R-SIG-Mac] [External] Re: Xcode 10.2.1

2019-04-24 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Yes that is where I found the command. I would add though that I had done that for Xcode 10.2.0, and appears that when you install the new versions that the installer actually deletes the headers at that location. At least that is what happened to me when I updated to Xcode 10.2.1. So people

Re: [R-SIG-Mac] Xcode 10.2.1

2019-04-24 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Hi Kaspar: There is an issue of where Xcode puts headers. I have posted on this previously. I did the same update as you, and not only doesn't Xcode put the headers where R expects, it appears to delete the existing headers. Anyhow, try running the following and see if your problems go

Re: [R-SIG-Mac] Compiling packages from source under Mojave (10.14.x)

2019-04-04 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
g Xcode 10.2 >> >> HTH, >> >> -Roy >> >> >>> On Apr 4, 2019, at 12:26 PM, Simon Urbanek >>> wrote: >>> >>> Roy, >>> >>> thanks, but can you give some details? I'm on a Mojave system and don't see &

Re: [R-SIG-Mac] Compiling packages from source under Mojave (10.14.x)

2019-04-04 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
and don't see > any issues - this will likely depend on your Xcode installation. Does it mean > some Xcode version is lacking headers? Which version, how did you install it? > > Thanks, > Simon > > >> On Mar 30, 2019, at 2:21 PM, Roy Mendelssohn - NOAA Federal via R-

[R-SIG-Mac] Compiling packages from source under Mojave (10.14.x)

2019-03-30 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
I recently updated to Mojave and all of a sudden I was getting header not found errors when trying to compile packages. I was pretty certain my Makevars files was correct, as I had been compiling before the upgrade successfully, and the compilers hadn't changed. The following is in some of

Re: [R-SIG-Mac] libcurl

2019-02-27 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
been installed inadvertently. >> >> stop press: configure works! Thanks! >> >> >> Best wishes >> >> Robin >> >> >> >> hankin.ro...@gmail.com >> >> >> >> hankin.ro...@gmail.com >> >> >&g

Re: [R-SIG-Mac] libcurl

2019-02-27 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
gt; hankin.ro...@gmail.com > > > > hankin.ro...@gmail.com > > > > > On Thu, Feb 28, 2019 at 2:47 PM Roy Mendelssohn - NOAA Federal via > R-SIG-Mac wrote: >> >> Anaconda adds code to the end of your ,.profile that can really play havoc >> with paths

Re: [R-SIG-Mac] libcurl

2019-02-27 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Anaconda adds code to the end of your ,.profile that can really play havoc with paths in other programs/settings - and off I remember correctly it puts the changes at the front of your $PATH.. I moved that code in .profile to a separate file. When I want anaconda, I just source the file.

Re: [R-SIG-Mac] Issues with rj (requirement for StatET) since Mojave/3.5.1 update

2018-11-16 Thread Roy Mendelssohn - NOAA Federal via R-SIG-Mac
Check that you have the latest version of the clang compiler from the r-mac site. I believe the present version supports -fopenmp, previous version did not. If not, I can point you to a different link to download the compiler, but I think using the officially approved versions the cleanest