On Sun, Nov 25, 2018 at 9:48 PM Jonathan Greenberg
wrote:
>
> Ok, figured it out but it was non-trivial. I found the solution here:
>
https://github.com/velocyto-team/velocyto.R/issues/2#issuecomment-352584213
>
> TLDR you need to use homebrew (https://brew.sh/):
> 1) Install homebrew as linked
On Thu, Nov 29, 2018 at 4:06 PM Simon Urbanek
wrote:
>
> For posterity: both recommendations are plain wrong so don't use
(obviously, the settings didn't match the installed compilers). They are
not supported in the CRAN version of R which is compiled by the clang 6.0
compiler in
For posterity: both recommendations are plain wrong so don't use (obviously,
the settings didn't match the installed compilers). They are not supported in
the CRAN version of R which is compiled by the clang 6.0 compiler in
/usr/local/clang6 that we supply on CRAN. You can compile your own R or
On Sun, Nov 25, 2018 at 9:48 PM Jonathan Greenberg
wrote:
>
> Ok, figured it out but it was non-trivial. I found the solution here:
>
https://github.com/velocyto-team/velocyto.R/issues/2#issuecomment-352584213
>
> TLDR you need to use homebrew (https://brew.sh/):
> 1) Install homebrew as linked
Ok, figured it out but it was non-trivial. I found the solution here:
https://github.com/velocyto-team/velocyto.R/issues/2#issuecomment-352584213
TLDR you need to use homebrew (https://brew.sh/):
1) Install homebrew as linked above
2) Install llvm (and maybe boost):
brew install llvm
brew
I'm aware rJava can be installed as a binary and that this is an OS issue,
hence posting on r-sig-mac. I assumed more people are familiar with rJava then
rj and I'm fairly confident it's the same issue, hence my showing that error.
rj is not on CRAN AFAIK so I'm trying to solve the source
BTW, reading the manual (in this case 'R Installation and
Administration') often helps, and would have here.
On 16/11/2018 19:10, Jonathan Greenberg wrote:
I'm hoping to get some insight into seeing if I can get "rj" working again in Mojave/R
3.5.1 -- this is a requirements for the Eclipse
Check that you have the latest version of the clang compiler from the r-mac
site. I believe the present version supports -fopenmp, previous version did
not. If not, I can point you to a different link to download the compiler,
but I think using the officially approved versions the cleanest
I'm hoping to get some insight into seeing if I can get "rj" working again in
Mojave/R 3.5.1 -- this is a requirements for the Eclipse interface to R
"Stat-ET") -- I'm seeing similar issues when trying to get rJava working also
from source, e.g.:
Rscript -e 'install.packages("rJava",
