Re: [R-SIG-Mac] R CMD build "cannot open compressed file" with R 3.6.2
I am glad my response helped direct you toward a resolution, but antivirus interference did not actually occur to me. Thanks for reporting back. On January 1, 2020 7:23:12 AM PST, Spencer Graves wrote: > Thanks to Jeff Newmiller for his reply. He was correct. My >Bitdefender internet security automatically upgraded itself and started > >blocking R in ways it had not before. Please excuse me for taking the >time of this list with this issue (and for my delay in sending this >"issue resolution" email). > > > Spencer Graves > > >On 2019-12-25 13:18, Spencer Graves wrote: >> >> >> On 2019-12-25 12:02, Jeff Newmiller wrote: >>> "Permission denied" suggests that this is not related to R. Perhaps >you ran R with elevated permissions yesterday? >>> >>> On December 25, 2019 8:37:36 AM PST, Spencer >Graves wrote: Hello, All: I just upgraded to R 3.6.2 and suddenly got, "cannot open compressed file" with "R CMD build" of a package that I built >yesterday with R 3.6.1, and I don't recall having gotten an error message >with 3.6.1. What do you suggest I do to get around this? Thanks, Spencer Graves $ R CMD build Ecfun * checking for file ‘Ecfun/DESCRIPTION’ ... OK * preparing ‘Ecfun’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘Ecfun_0.2-2.tar.gz’ Warning in gzfile(tarfile, "wb", compression = compression_level) : cannot open compressed file '/Users/sbgraves/Documents/current/R/Ecfun_0.2-2.tar.gz', probable reason 'Permission denied' Error in gzfile(tarfile, "wb", compression = compression_level) : cannot open the connection Execution halted $ r > sessionInfo() R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.2 Matrix products: default BLAS: >/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib LAPACK: >/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.6.2 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> -- Sent from my phone. Please excuse my brevity. ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] R CMD build "cannot open compressed file" with R 3.6.2
Thanks to Jeff Newmiller for his reply. He was correct. My Bitdefender internet security automatically upgraded itself and started blocking R in ways it had not before. Please excuse me for taking the time of this list with this issue (and for my delay in sending this "issue resolution" email). Spencer Graves On 2019-12-25 13:18, Spencer Graves wrote: On 2019-12-25 12:02, Jeff Newmiller wrote: "Permission denied" suggests that this is not related to R. Perhaps you ran R with elevated permissions yesterday? On December 25, 2019 8:37:36 AM PST, Spencer Graves wrote: Hello, All: I just upgraded to R 3.6.2 and suddenly got, "cannot open compressed file" with "R CMD build" of a package that I built yesterday with R 3.6.1, and I don't recall having gotten an error message with 3.6.1. What do you suggest I do to get around this? Thanks, Spencer Graves $ R CMD build Ecfun * checking for file ‘Ecfun/DESCRIPTION’ ... OK * preparing ‘Ecfun’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘Ecfun_0.2-2.tar.gz’ Warning in gzfile(tarfile, "wb", compression = compression_level) : cannot open compressed file '/Users/sbgraves/Documents/current/R/Ecfun_0.2-2.tar.gz', probable reason 'Permission denied' Error in gzfile(tarfile, "wb", compression = compression_level) : cannot open the connection Execution halted $ r sessionInfo() R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.2 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.6.2 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
Re: [R-SIG-Mac] R CMD build "cannot open compressed file" with R 3.6.2
"Permission denied" suggests that this is not related to R. Perhaps you ran R with elevated permissions yesterday? On December 25, 2019 8:37:36 AM PST, Spencer Graves wrote: >Hello, All: > > > I just upgraded to R 3.6.2 and suddenly got, "cannot open >compressed file" with "R CMD build" of a package that I built yesterday > >with R 3.6.1, and I don't recall having gotten an error message with >3.6.1. > > > What do you suggest I do to get around this? > Thanks, > Spencer Graves > > >$ R CMD build Ecfun >* checking for file ‘Ecfun/DESCRIPTION’ ... OK >* preparing ‘Ecfun’: >* checking DESCRIPTION meta-information ... OK >* installing the package to build vignettes >* creating vignettes ... OK >* checking for LF line-endings in source and make files and shell >scripts >* checking for empty or unneeded directories >* building ‘Ecfun_0.2-2.tar.gz’ >Warning in gzfile(tarfile, "wb", compression = compression_level) : > cannot open compressed file >'/Users/sbgraves/Documents/current/R/Ecfun_0.2-2.tar.gz', probable >reason 'Permission denied' >Error in gzfile(tarfile, "wb", compression = compression_level) : > cannot open the connection >Execution halted > >$ r > >sessionInfo() >R version 3.6.2 (2019-12-12) >Platform: x86_64-apple-darwin15.6.0 (64-bit) >Running under: macOS Catalina 10.15.2 > >Matrix products: default >BLAS: >/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib >LAPACK: >/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib > >locale: >[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 > >attached base packages: >[1] stats graphics grDevices utils datasets methods base > >loaded via a namespace (and not attached): >[1] compiler_3.6.2 > > > >___ >R-SIG-Mac mailing list >R-SIG-Mac@r-project.org >https://stat.ethz.ch/mailman/listinfo/r-sig-mac -- Sent from my phone. Please excuse my brevity. ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
[R-SIG-Mac] R CMD build "cannot open compressed file" with R 3.6.2
Hello, All: I just upgraded to R 3.6.2 and suddenly got, "cannot open compressed file" with "R CMD build" of a package that I built yesterday with R 3.6.1, and I don't recall having gotten an error message with 3.6.1. What do you suggest I do to get around this? Thanks, Spencer Graves $ R CMD build Ecfun * checking for file ‘Ecfun/DESCRIPTION’ ... OK * preparing ‘Ecfun’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * building ‘Ecfun_0.2-2.tar.gz’ Warning in gzfile(tarfile, "wb", compression = compression_level) : cannot open compressed file '/Users/sbgraves/Documents/current/R/Ecfun_0.2-2.tar.gz', probable reason 'Permission denied' Error in gzfile(tarfile, "wb", compression = compression_level) : cannot open the connection Execution halted $ r >sessionInfo() R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.2 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.6.2 > ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
