Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-16 Thread Simon Urbanek 
John,

thanks, yes, it has not actually disappeared, but I am now explicitly 
suppressing it (only in the console stderr forwarding, it will still appear in 
the logs if you run the debug version or disable stderr forwarding). It is a 
rather terrible hack, but until I have a way to replicate and find what 
macOS-internal part is triggering it, it's better to suppress it as it is 
confusing people that are taking it for an error.

Thanks,
Simon


> On Feb 17, 2021, at 3:20 AM, John Fox  wrote:
> 
> Dear Simon,
> 
> I just installed R 4.0.4 and the warning has disappeared. I expect that you 
> know that but thought that it might be useful to confirm it just in case.
> 
> Best,
> John
> 
> On 2021-02-12 9:05 p.m., John Fox wrote:
>> Dear Simon,
>> I'm still seeing the warning on a MacBook Pro with a touchbar running Big 
>> Sur:
>> --- snip 
>> R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
>> Copyright (C) 2021 The R Foundation for Statistical Computing
>> Platform: x86_64-apple-darwin17.0 (64-bit)
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution details.
>>   Natural language support but running in an English locale
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>> Type 'demo()' for some demos, 'help()' for on-line help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>> [R.app GUI 1.74 (7929) x86_64-apple-darwin17.0]
>> [History restored from /Users/johnfox/.Rapp.history]
>> 2021-02-12 21:00:21.163 R[19677:11057750] Warning: Expected min height of 
>> view: () to be less than or 
>> equal to 30 but got a height of 32.00. This error will be logged once 
>> per view in violation.
>> > sessionInfo()
>> R version 4.0.4 RC (2021-02-12 r79998)
>> Platform: x86_64-apple-darwin17.0 (64-bit)
>> Running under: macOS Big Sur 10.16
>> Matrix products: default
>> BLAS: 
>> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
>> LAPACK: 
>> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
>> locale:
>> [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
>> attached base packages:
>> [1] stats graphics  grDevices utils datasets  methods   base
>> loaded via a namespace (and not attached):
>> [1] compiler_4.0.4
>> --- snip 
>> I hope this helps,
>>  John
>> John Fox, Professor Emeritus
>> McMaster University
>> Hamilton, Ontario, Canada
>> web: https://socialsciences.mcmaster.ca/jfox/
>> On 2021-02-12 6:50 p.m., Simon Urbanek wrote:
>>> Dear macOS useRs,
>>> 
>>> please test the latest R 4.0.4 RC builds from
>>> 
>>> https://mac.r-project.org/
>>> 
>>> especially if you are running macOS Big Sur. The known issues introduced by 
>>> Big Sur have been fixed, but I cannot replicate nor test the spurious 
>>> touchbar warning.
>>> 
>>> Also a reminder to *not* install XQuartz betas even if XQuartz ask you to - 
>>> they are betas for a reason (=unstable) and break things.
>>> 
>>> Cheers,
>>> Simon
>>> 
>>> ___
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac@r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>> 
> 

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Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-16 Thread John Fox 

Dear Simon,

I just installed R 4.0.4 and the warning has disappeared. I expect that 
you know that but thought that it might be useful to confirm it just in 
case.


Best,
 John

On 2021-02-12 9:05 p.m., John Fox wrote:

Dear Simon,

I'm still seeing the warning on a MacBook Pro with a touchbar running 
Big Sur:


--- snip 

R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

   Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

[R.app GUI 1.74 (7929) x86_64-apple-darwin17.0]

[History restored from /Users/johnfox/.Rapp.history]

2021-02-12 21:00:21.163 R[19677:11057750] Warning: Expected min height 
of view: () to be less than 
or equal to 30 but got a height of 32.00. This error will be logged 
once per view in violation.


 > sessionInfo()
R version 4.0.4 RC (2021-02-12 r79998)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16

Matrix products: default
BLAS: 
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: 
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib


locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8

attached base packages:
[1] stats graphics  grDevices utils datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_4.0.4

--- snip 

I hope this helps,
  John

John Fox, Professor Emeritus
McMaster University
Hamilton, Ontario, Canada
web: https://socialsciences.mcmaster.ca/jfox/

On 2021-02-12 6:50 p.m., Simon Urbanek wrote:

Dear macOS useRs,

please test the latest R 4.0.4 RC builds from

https://mac.r-project.org/

especially if you are running macOS Big Sur. The known issues 
introduced by Big Sur have been fixed, but I cannot replicate nor test 
the spurious touchbar warning.


Also a reminder to *not* install XQuartz betas even if XQuartz ask you 
to - they are betas for a reason (=unstable) and break things.


Cheers,
Simon

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Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-13 Thread Michael Hall 



> On Feb 13, 2021, at 8:30 PM, Simon Urbanek  
> wrote:
> 
> Michael,
> Thanks, but please don't post 3rd party links that are just one-liners with 
> extra advertising, especially when they have been already mentioned.
> Cheers,
> Simon

I think my link expanded some on the original answer which it didn’t sound like 
worked.
‘
It included additionally…

sudo xcode-select —reset

and…

If even that fails, go to the Apple developer download section and download 
Xcode manually.

But I did just google it and have no personal experience with the error. Often 
though just google will find you someone else who has dealt with the issue.

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Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-13 Thread Simon Urbanek 
Michael,
Thanks, but please don't post 3rd party links that are just one-liners with 
extra advertising, especially when they have been already mentioned.
Cheers,
Simon


> On Feb 14, 2021, at 15:00, Michael Hall  wrote:
> 
> 
> 
>> On Feb 13, 2021, at 5:41 PM, r-sig-mac-requ...@r-project.org wrote:
>> 
>> xcrun: error: invalid active developer path 
>> (/Library/Developer/CommandLineTools), missing xcrun at: 
>> /Library/Developer/CommandLineTools/usr/bin/xcrun
> 
> https://ma.ttias.be/mac-os-xcrun-error-invalid-active-developer-path-missing-xcrun/
> 
> 
>   [[alternative HTML version deleted]]
> 
> ___
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> 

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Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-13 Thread Michael Hall 



> On Feb 13, 2021, at 5:41 PM, r-sig-mac-requ...@r-project.org wrote:
> 
> xcrun: error: invalid active developer path 
> (/Library/Developer/CommandLineTools), missing xcrun at: 
> /Library/Developer/CommandLineTools/usr/bin/xcrun

https://ma.ttias.be/mac-os-xcrun-error-invalid-active-developer-path-missing-xcrun/


[[alternative HTML version deleted]]

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Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-13 Thread Simon Urbanek 
Thanks for testing and the reports!

Unfortunately, I cannot reproduce the touch-bar issue, because it doesn''t 
appear when run in Xcode with touch-bar emulation and I don't have a Mac with 
Big Sur and a touch-bar. Moreover, R is not providing custom touch-bar icons so 
I can't even find out which element it is complaining about. If anyone has any 
leads, let me know. If we ever find a work-arournd, it should be possible to do 
in the GUI alone so possibly after the release (unlike the Quartz bug which 
needed changes in core R).

Other projects have seen the same issue so it's likely a macOS bug, but the fix 
that worked for others (re-compile with Xcode 12) did not work for us (the last 
build was using the latests Xcode 12.4). 

Cheers,
Simon



> On Feb 13, 2021, at 3:05 PM, John Fox  wrote:
> 
> Dear Simon,
> 
> I'm still seeing the warning on a MacBook Pro with a touchbar running Big Sur:
> 
> --- snip 
> 
> R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
> Copyright (C) 2021 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin17.0 (64-bit)
> 
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> 
>  Natural language support but running in an English locale
> 
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> 
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> 
> [R.app GUI 1.74 (7929) x86_64-apple-darwin17.0]
> 
> [History restored from /Users/johnfox/.Rapp.history]
> 
> 2021-02-12 21:00:21.163 R[19677:11057750] Warning: Expected min height of 
> view: () to be less than or 
> equal to 30 but got a height of 32.00. This error will be logged once per 
> view in violation.
> 
> > sessionInfo()
> R version 4.0.4 RC (2021-02-12 r79998)
> Platform: x86_64-apple-darwin17.0 (64-bit)
> Running under: macOS Big Sur 10.16
> 
> Matrix products: default
> BLAS: 
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
> LAPACK: 
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
> 
> locale:
> [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
> 
> attached base packages:
> [1] stats graphics  grDevices utils datasets  methods   base
> 
> loaded via a namespace (and not attached):
> [1] compiler_4.0.4
> 
> --- snip 
> 
> I hope this helps,
> John
> 
> John Fox, Professor Emeritus
> McMaster University
> Hamilton, Ontario, Canada
> web: https://socialsciences.mcmaster.ca/jfox/
> 
> On 2021-02-12 6:50 p.m., Simon Urbanek wrote:
>> Dear macOS useRs,
>> please test the latest R 4.0.4 RC builds from
>> https://mac.r-project.org/
>> especially if you are running macOS Big Sur. The known issues introduced by 
>> Big Sur have been fixed, but I cannot replicate nor test the spurious 
>> touchbar warning.
>> Also a reminder to *not* install XQuartz betas even if XQuartz ask you to - 
>> they are betas for a reason (=unstable) and break things.
>> Cheers,
>> Simon
>> ___
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> 

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Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-12 Thread Milani Chaloupka 
Thanks Simon for the R 4.04 RC build.

It still has the MacBook Pro touchbar warning for any window being opened 
(including package updated window).

But as you have noted before, it does not seem to affect any apparent 
functionality.

#

2021-02-13 12:10:13.573 R[719:10406] Warning: Expected min height of view: 
() to be less than or equal to 30 but got a height of 
32.00. This error will be logged once per view in violation.

#

regards

Milani



Dr Milani Chaloupka
Ecological Modelling Services P/L
PO Box 6150, University of Queensland
St Lucia, Queensland, 4067, Australia

Honorary Associate Professor
School of Biological Sciences, University of Queensland
Brisbane, Queensland, 4072, Australia

Scientific Advisory Committee (Member)
Caribbean Conservation Corporation
Gainesville, Florida, USA

Science and Statistics Committee (Member)
Western Pacific Regional Fisheries Management Council
NOAA, US Dept of Commerce, Honolulu, Hawaii, USA

m.chalou...@uq.edu.au
m.chalou...@me.com
phone: + 61 7 3878-3229
mobile: (local) 0419180554  (international) + 61 419180554
skype: milani2005




On 13 Feb 2021, at 9:50 am, Simon Urbanek 
mailto:simon.urba...@r-project.org>> wrote:

Dear macOS useRs,

please test the latest R 4.0.4 RC builds from

https://mac.r-project.org/

especially if you are running macOS Big Sur. The known issues introduced by Big 
Sur have been fixed, but I cannot replicate nor test the spurious touchbar 
warning.

Also a reminder to *not* install XQuartz betas even if XQuartz ask you to - 
they are betas for a reason (=unstable) and break things.

Cheers,
Simon

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[[alternative HTML version deleted]]

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Re: [R-SIG-Mac] Please test R 4.0.4 RC

2021-02-12 Thread John Fox 

Dear Simon,

I'm still seeing the warning on a MacBook Pro with a touchbar running 
Big Sur:


--- snip 

R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

[R.app GUI 1.74 (7929) x86_64-apple-darwin17.0]

[History restored from /Users/johnfox/.Rapp.history]

2021-02-12 21:00:21.163 R[19677:11057750] Warning: Expected min height 
of view: () to be less than 
or equal to 30 but got a height of 32.00. This error will be logged 
once per view in violation.


> sessionInfo()
R version 4.0.4 RC (2021-02-12 r79998)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur 10.16

Matrix products: default
BLAS: 
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: 
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib


locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8

attached base packages:
[1] stats graphics  grDevices utils datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_4.0.4

--- snip 

I hope this helps,
 John

John Fox, Professor Emeritus
McMaster University
Hamilton, Ontario, Canada
web: https://socialsciences.mcmaster.ca/jfox/

On 2021-02-12 6:50 p.m., Simon Urbanek wrote:

Dear macOS useRs,

please test the latest R 4.0.4 RC builds from

https://mac.r-project.org/

especially if you are running macOS Big Sur. The known issues introduced by Big 
Sur have been fixed, but I cannot replicate nor test the spurious touchbar 
warning.

Also a reminder to *not* install XQuartz betas even if XQuartz ask you to - 
they are betas for a reason (=unstable) and break things.

Cheers,
Simon

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[R-SIG-Mac] Please test R 4.0.4 RC

2021-02-12 Thread Simon Urbanek 
Dear macOS useRs,

please test the latest R 4.0.4 RC builds from

https://mac.r-project.org/

especially if you are running macOS Big Sur. The known issues introduced by Big 
Sur have been fixed, but I cannot replicate nor test the spurious touchbar 
warning.

Also a reminder to *not* install XQuartz betas even if XQuartz ask you to - 
they are betas for a reason (=unstable) and break things.

Cheers,
Simon

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