subject:"\[R\-SIG\-Mac\] incompatible lldb on mojave\?"

Re: [R-SIG-Mac] incompatible lldb on mojave?

2020-05-03 Thread Vincent Carey

Thanks, I am upgrading a machine to catalina and will get back to you.

On Sun, May 3, 2020 at 8:01 AM Bob Rudis  wrote:

> Can you provide a bit more info on the setup?
>
> I ask b/c: (more below the snippet)
>
> $ R -d lldb
> (lldb) target create
> "/Library/Frameworks/R.framework/Resources/bin/exec/R"
> Current executable set to
> '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).
> (lldb) run
> Process 3834 launched:
> '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64)
>
> R version 4.0.0 RC (2020-04-21 r78267) -- "Arbor Day"
> Copyright (C) 2020 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin17.0 (64-bit)
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
>
>   Natural language support but running in an English locale
>
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
>
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
>
> > str(mtcars)
> 'data.frame':   32 obs. of  11 variables:
>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...
>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ...
>  $ disp: num  160 160 108 258 360 ...
>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ...
>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...
>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ...
>  $ qsec: num  16.5 17 18.6 19.4 17 ...
>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ...
>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ...
>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ...
>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ...
> >
>
> I have full Xcode installed and updated to latest (I'm on developer betas).
>
> $ lldb --version
> lldb-1103.0.17
> Apple Swift version 5.2 (swiftlang-1103.0.22 clang-1103.0.22)
>
> I'm also on a more restrictive OS (Catalina).
>
> Of note: macOS prompted me for permission to use lldb.
>
> -boB
>
> On Sat, May 2, 2020 at 11:26 PM Simon Urbanek
>  wrote:
> >
> > Vince,
> >
> > Apple no longer allows debugging of distributed apps - see R for Mac FAQ
> 10.17:
> >
> http://mac.r-project.org/bin/macosx/RMacOSX-FAQ.html#I-cannot-attach-debugger-to-R
> >
> > Another (not recommended) work-around is to disable SIP.
> >
> > Cheers,
> > Simon
> >
> >
> >
> > > On 3/05/2020, at 10:42 AM, Vincent Carey 
> wrote:
> > >
> > > I'd like to make use of material in
> > >
> > > https://kevinushey.github.io/blog/2015/04/13/debugging-with-lldb/
> > >
> > > But with R 4.0 I get
> > >
> > > %vjcair> R -d lldb
> > >
> > > (lldb) target create
> "/Library/Frameworks/R.framework/Resources/bin/exec/R"
> > >
> > > Current executable set to
> > > '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).
> > >
> > > (lldb) run
> > >
> > > error: process exited with status -1 (Error 1)
> > >
> > > (lldb) quit
> > >
> > > %vjcair> which lldb
> > >
> > > /usr/bin/lldb
> > >
> > > %vjcair> lldb --version
> > >
> > > lldb-1100.0.30.12
> > >
> > > Apple Swift version 5.1.3 (swiftlang-1100.0.282.1 clang-1100.0.33.15)
> > >
> > >
> > > with gdb, there is a little more info -- and a peculiar warning that
> > > mentions /Volumes/Builds/Simon/R4/h ...
> > >
> > >
> > > %vjcair> R -d gdb
> > >
> > > GNU gdb (GDB) 8.1
> > >
> > > Copyright (C) 2018 Free Software Foundation, Inc.
> > >
> > > License GPLv3+: GNU GPL version 3 or later <
> http://gnu.org/licenses/gpl.html
> > >>
> > >
> > > This is free software: you are free to change and redistribute it.
> > >
> > > There is NO WARRANTY, to the extent permitted by law.  Type "show
> copying"
> > >
> > > and "show warranty" for details.
> > >
> > > This GDB was configured as "x86_64-apple-darwin16.7.0".
> > >
> > > Type "show configuration" for configuration details.
> > >
> > > For bug reporting instructions, please see:
> > >
> > > .
> > >
> > > Find the GDB manual and other documentation resources online at:
> > >
> > > .
> > >
> > > For help, type "help".
> > >
> > > Type "apropos word" to search for commands related to "word"...
> > >
> > > Reading symbols from
> /Library/Frameworks/R.framework/Resources/bin/exec/R...
> > >
> > > warning:
> > >
> `/Volumes/Builds/Simon/R4/high-sierra-x86_64/R-4.0-branch/src/main/Rmain.o':
> > > can't open to read symbols: No such file or directory.
> > >
> > > (no debugging symbols found)...done.
> > >
> > > (gdb) run
> > >
> > > Starting program:
> > > /Library/Frameworks/R.framework/Versions/4.0/Resources/bin/exec/R
> > >
> > > Unable to find Mach task port for process-id 59032: (os/kern) failure
> (0x5).
> > >
> > > (please check gdb is

Re: [R-SIG-Mac] incompatible lldb on mojave?

2020-05-03 Thread Bob Rudis

Can you provide a bit more info on the setup?

I ask b/c: (more below the snippet)

$ R -d lldb
(lldb) target create "/Library/Frameworks/R.framework/Resources/bin/exec/R"
Current executable set to
'/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).
(lldb) run
Process 3834 launched:
'/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64)

R version 4.0.0 RC (2020-04-21 r78267) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> str(mtcars)
'data.frame':   32 obs. of  11 variables:
 $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...
 $ cyl : num  6 6 4 6 8 6 8 4 4 6 ...
 $ disp: num  160 160 108 258 360 ...
 $ hp  : num  110 110 93 110 175 105 245 62 95 123 ...
 $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...
 $ wt  : num  2.62 2.88 2.32 3.21 3.44 ...
 $ qsec: num  16.5 17 18.6 19.4 17 ...
 $ vs  : num  0 0 1 1 0 1 0 1 1 1 ...
 $ am  : num  1 1 1 0 0 0 0 0 0 0 ...
 $ gear: num  4 4 4 3 3 3 3 4 4 4 ...
 $ carb: num  4 4 1 1 2 1 4 2 2 4 ...
>

I have full Xcode installed and updated to latest (I'm on developer betas).

$ lldb --version
lldb-1103.0.17
Apple Swift version 5.2 (swiftlang-1103.0.22 clang-1103.0.22)

I'm also on a more restrictive OS (Catalina).

Of note: macOS prompted me for permission to use lldb.

-boB

On Sat, May 2, 2020 at 11:26 PM Simon Urbanek
 wrote:
>
> Vince,
>
> Apple no longer allows debugging of distributed apps - see R for Mac FAQ 
> 10.17:
> http://mac.r-project.org/bin/macosx/RMacOSX-FAQ.html#I-cannot-attach-debugger-to-R
>
> Another (not recommended) work-around is to disable SIP.
>
> Cheers,
> Simon
>
>
>
> > On 3/05/2020, at 10:42 AM, Vincent Carey  wrote:
> >
> > I'd like to make use of material in
> >
> > https://kevinushey.github.io/blog/2015/04/13/debugging-with-lldb/
> >
> > But with R 4.0 I get
> >
> > %vjcair> R -d lldb
> >
> > (lldb) target create "/Library/Frameworks/R.framework/Resources/bin/exec/R"
> >
> > Current executable set to
> > '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).
> >
> > (lldb) run
> >
> > error: process exited with status -1 (Error 1)
> >
> > (lldb) quit
> >
> > %vjcair> which lldb
> >
> > /usr/bin/lldb
> >
> > %vjcair> lldb --version
> >
> > lldb-1100.0.30.12
> >
> > Apple Swift version 5.1.3 (swiftlang-1100.0.282.1 clang-1100.0.33.15)
> >
> >
> > with gdb, there is a little more info -- and a peculiar warning that
> > mentions /Volumes/Builds/Simon/R4/h ...
> >
> >
> > %vjcair> R -d gdb
> >
> > GNU gdb (GDB) 8.1
> >
> > Copyright (C) 2018 Free Software Foundation, Inc.
> >
> > License GPLv3+: GNU GPL version 3 or later  >>
> >
> > This is free software: you are free to change and redistribute it.
> >
> > There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
> >
> > and "show warranty" for details.
> >
> > This GDB was configured as "x86_64-apple-darwin16.7.0".
> >
> > Type "show configuration" for configuration details.
> >
> > For bug reporting instructions, please see:
> >
> > .
> >
> > Find the GDB manual and other documentation resources online at:
> >
> > .
> >
> > For help, type "help".
> >
> > Type "apropos word" to search for commands related to "word"...
> >
> > Reading symbols from /Library/Frameworks/R.framework/Resources/bin/exec/R...
> >
> > warning:
> > `/Volumes/Builds/Simon/R4/high-sierra-x86_64/R-4.0-branch/src/main/Rmain.o':
> > can't open to read symbols: No such file or directory.
> >
> > (no debugging symbols found)...done.
> >
> > (gdb) run
> >
> > Starting program:
> > /Library/Frameworks/R.framework/Versions/4.0/Resources/bin/exec/R
> >
> > Unable to find Mach task port for process-id 59032: (os/kern) failure (0x5).
> >
> > (please check gdb is codesigned - see taskgated(8))
> >
> >> sessionInfo()
> >
> > R version 4.0.0 Patched (2020-04-27 r78309)
> >
> > Platform: x86_64-apple-darwin17.0 (64-bit)
> >
> > Running under: macOS Mojave 10.14.6
> >
> >
> > Matrix products: default
> >
> > BLAS:
> > /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
> >
> > LAPACK:
> > /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
> >
> > --
> >

Re: [R-SIG-Mac] incompatible lldb on mojave?

2020-05-02 Thread Simon Urbanek

Vince,

Apple no longer allows debugging of distributed apps - see R for Mac FAQ 10.17:
http://mac.r-project.org/bin/macosx/RMacOSX-FAQ.html#I-cannot-attach-debugger-to-R

Another (not recommended) work-around is to disable SIP.

Cheers,
Simon



> On 3/05/2020, at 10:42 AM, Vincent Carey  wrote:
> 
> I'd like to make use of material in
> 
> https://kevinushey.github.io/blog/2015/04/13/debugging-with-lldb/
> 
> But with R 4.0 I get
> 
> %vjcair> R -d lldb
> 
> (lldb) target create "/Library/Frameworks/R.framework/Resources/bin/exec/R"
> 
> Current executable set to
> '/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).
> 
> (lldb) run
> 
> error: process exited with status -1 (Error 1)
> 
> (lldb) quit
> 
> %vjcair> which lldb
> 
> /usr/bin/lldb
> 
> %vjcair> lldb --version
> 
> lldb-1100.0.30.12
> 
> Apple Swift version 5.1.3 (swiftlang-1100.0.282.1 clang-1100.0.33.15)
> 
> 
> with gdb, there is a little more info -- and a peculiar warning that
> mentions /Volumes/Builds/Simon/R4/h ...
> 
> 
> %vjcair> R -d gdb
> 
> GNU gdb (GDB) 8.1
> 
> Copyright (C) 2018 Free Software Foundation, Inc.
> 
> License GPLv3+: GNU GPL version 3 or later > 
> 
> This is free software: you are free to change and redistribute it.
> 
> There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
> 
> and "show warranty" for details.
> 
> This GDB was configured as "x86_64-apple-darwin16.7.0".
> 
> Type "show configuration" for configuration details.
> 
> For bug reporting instructions, please see:
> 
> .
> 
> Find the GDB manual and other documentation resources online at:
> 
> .
> 
> For help, type "help".
> 
> Type "apropos word" to search for commands related to "word"...
> 
> Reading symbols from /Library/Frameworks/R.framework/Resources/bin/exec/R...
> 
> warning:
> `/Volumes/Builds/Simon/R4/high-sierra-x86_64/R-4.0-branch/src/main/Rmain.o':
> can't open to read symbols: No such file or directory.
> 
> (no debugging symbols found)...done.
> 
> (gdb) run
> 
> Starting program:
> /Library/Frameworks/R.framework/Versions/4.0/Resources/bin/exec/R
> 
> Unable to find Mach task port for process-id 59032: (os/kern) failure (0x5).
> 
> (please check gdb is codesigned - see taskgated(8))
> 
>> sessionInfo()
> 
> R version 4.0.0 Patched (2020-04-27 r78309)
> 
> Platform: x86_64-apple-darwin17.0 (64-bit)
> 
> Running under: macOS Mojave 10.14.6
> 
> 
> Matrix products: default
> 
> BLAS:
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
> 
> LAPACK:
> /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
> 
> -- 
> The information in this e-mail is intended only for th...{{dropped:8}}

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[R-SIG-Mac] incompatible lldb on mojave?

2020-05-02 Thread Vincent Carey

I'd like to make use of material in

https://kevinushey.github.io/blog/2015/04/13/debugging-with-lldb/

But with R 4.0 I get

%vjcair> R -d lldb

(lldb) target create "/Library/Frameworks/R.framework/Resources/bin/exec/R"

Current executable set to
'/Library/Frameworks/R.framework/Resources/bin/exec/R' (x86_64).

(lldb) run

error: process exited with status -1 (Error 1)

(lldb) quit

%vjcair> which lldb

/usr/bin/lldb

%vjcair> lldb --version

lldb-1100.0.30.12

Apple Swift version 5.1.3 (swiftlang-1100.0.282.1 clang-1100.0.33.15)


with gdb, there is a little more info -- and a peculiar warning that
mentions /Volumes/Builds/Simon/R4/h ...


%vjcair> R -d gdb

GNU gdb (GDB) 8.1

Copyright (C) 2018 Free Software Foundation, Inc.

License GPLv3+: GNU GPL version 3 or later 

This is free software: you are free to change and redistribute it.

There is NO WARRANTY, to the extent permitted by law.  Type "show copying"

and "show warranty" for details.

This GDB was configured as "x86_64-apple-darwin16.7.0".

Type "show configuration" for configuration details.

For bug reporting instructions, please see:

.

Find the GDB manual and other documentation resources online at:

.

For help, type "help".

Type "apropos word" to search for commands related to "word"...

Reading symbols from /Library/Frameworks/R.framework/Resources/bin/exec/R...

warning:
`/Volumes/Builds/Simon/R4/high-sierra-x86_64/R-4.0-branch/src/main/Rmain.o':
can't open to read symbols: No such file or directory.

(no debugging symbols found)...done.

(gdb) run

Starting program:
/Library/Frameworks/R.framework/Versions/4.0/Resources/bin/exec/R

Unable to find Mach task port for process-id 59032: (os/kern) failure (0x5).

 (please check gdb is codesigned - see taskgated(8))

> sessionInfo()

R version 4.0.0 Patched (2020-04-27 r78309)

Platform: x86_64-apple-darwin17.0 (64-bit)

Running under: macOS Mojave 10.14.6


Matrix products: default

BLAS:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib

LAPACK:
/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

-- 
The information in this e-mail is intended only for the ...{{dropped:18}}

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Re: [R-SIG-Mac] incompatible lldb on mojave?

Re: [R-SIG-Mac] incompatible lldb on mojave?

Re: [R-SIG-Mac] incompatible lldb on mojave?

[R-SIG-Mac] incompatible lldb on mojave?

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