[R-SIG-Mac] http requests in help window blocked as insecure

2017-07-06 Thread BATES Timothy
fyi, clicking on an http:// link in a help window (say a manual pdf) yields a deprecation warning now, so too does cmd+ starting httpd help server ... done 2017-07-06 22:27:11.219 R[33716:3185341] -deltaZ is deprecated for NSEventTypeMagnify. Please use -magnification. 2017-07-06 22:30:46.726

[R-SIG-Mac] Sys.timezone == NA?

2017-07-20 Thread BATES Timothy
Hi, On R 3.40, I've been getting some Warnings about timezone, e.g. Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'default/Europe/London' But also Sys.timezone returns NA Is this a bug? was there a change in tz moving to 3.4.0? Sys.timezone() [1] NA R version: R

Re: [R-SIG-Mac] Sys.timezone == NA?

2017-07-20 Thread BATES Timothy
into a problem. > On 20 Jul 2017, at 10:29 pm, peter dalgaard <pda...@gmail.com> wrote: > > >> On 20 Jul 2017, at 19:29 , BATES Timothy <tim.ba...@ed.ac.uk> wrote: >> >> Hi, >> On R 3.40, I've been getting some Warnings about timezone, e.g. >&g

[R-SIG-Mac] mirroring the cran build environment for R 3.4.x under El-capitan + (10.11+) MacOS

2017-08-05 Thread BATES Timothy
Hi all, Couple of questions about how CRAN is building packages for OSX under R 3.4.X El Cap+, prompted by our package (OpenMx) failing CRAN builds (despite building fine locally). Q1: Is it the case that there’s no equivalent of the win.build system for package creators to test their

[R-SIG-Mac] Error resizing a plot window: Error in UseMethod("depth") :

2017-08-29 Thread BATES Timothy
Resized a plot window and got this error in the console Error in UseMethod("depth") : no applicable method for 'depth' applied to an object of class "NULL" The plot was two ggplot2 graphs side by side, made using cowplot::plot_grid() Set up is R version: R version 3.4.1 (2017-06-30)

Re: [R-SIG-Mac] Read csv

2017-11-13 Thread BATES Timothy
likely the separator character is not the default "," that csv expects. look in the csv file and see what the separator character is: perhaps it is a ";" try: df <- read.csv("example.csv", header=TRUE, sep=";"); names(df) > On 13 Nov 2017, at 1:07 pm, 王宙翔 wrote: > >

Re: [R-SIG-Mac] HELP

2018-03-20 Thread BATES Timothy
Just FYI, I've had a lot of students in the last 2-weeks reporting errors like this about other packages with dependencies that have their own dependencies. The full chain doesn't appear to be being followed. For some, on Macs I think, they also have the problem of install.packages() trying to

Re: [R-SIG-Mac] Compiling packages from source under Mojave (10.14.x)

2019-04-02 Thread BATES Timothy
Many thanks Roy - it helped me, at least! Simon: This command ought perhaps to be included on https://cran.r-project.org/bin/macosx/tools/ as part of the "important note" It is obscure, with no good duckduckgo or stackoverflow results if the user types in their error message. Best, tim >

[R-SIG-Mac] printing bug: clipping the bottom and right-hand thirds of the plot window

2019-04-08 Thread BATES Timothy
With a plot window open and a plot rendered in it, printing (cmd-P) clips the graph (the bottom and right hand side thirds of the graph are clipped/masked white) This clipped image displays in the print preview and the printed image is clipped. Seems to affect all plots the same. The clipped

[R-SIG-Mac] mac build of R 3.7 to test out?

2019-05-07 Thread BATES Timothy
Related to the discussion of R-build specific clangs (3.5 -> clang 6; 3.6-> clang 7; 3.7 -> clang 8) Is there a mac build of R 3.7 to test out yet (which would use clang 8)? Looked on http://mac.r-project.org/#nightly and didn’t see one. I pulled down clang 8 the other day thinking it would

Re: [R-SIG-Mac] Help Topic Search banner will not close

2019-05-03 Thread BATES Timothy
Just to say can replicate this problem: the button text is erased and the expand search window can’t be closed and neither button responds to user input once yes is chosen. Happens every time. was present for a couple of versions ago. R version: R version 3.6.0 (2019-04-26) On 2 May 2019, at

[R-SIG-Mac] stop button grayed out when running shiny (esc still works)

2019-08-26 Thread BATES Timothy
Hi, If one runs a shiny app, the stop button remains grayed out, even though there is now something to stop. escape still works, but the user thinks R has frozen, (no carat) and can't be stopped (no button). Best, tim The University of Edinburgh is a charitable body, registered in Scotland,

[R-SIG-Mac] OpenMP on CRAN

2020-04-02 Thread BATES Timothy
Moving to a compiler that drops support for OpenMP seems a sad choice, especially now we’ve all climbed the learning curve of the non-Apple compiler (the real barrier was lack of a pkg installer and that’s done now). Losing OpenMP for the CRAN version of OpenMx/umx (our SEM packages) would be a

Re: [R-SIG-Mac] Behaviour or Quartz windows

2021-02-09 Thread BATES Timothy
Same behavior here with ggplot and base plotting: plots don’t display, but if I cmd<- then cmd->, the plot is drawn sessionInfo() output below > On 9 Feb 2021, at 15:35, Peter West wrote: > I’ll just confirm the odd behaviour of the Quartz window in Big Sur 11.2 R > 4.0.3 GUI 1.73 on M1

Re: [R-SIG-Mac] https://mac.r-project.org/benchmarks/

2021-11-02 Thread BATES Timothy
Just for normies like me who don’t know what Simon meant :-) 1. Open terminal.app and cd to where the relevant files are to keep commands manageable in length cd /Library/Frameworks/R.framework/Resources/lib/ 2. Find the paths to different versions of veclib by ls’ing the directory they