Re: [R-SIG-Mac] Using X11 from the mac terminal

2011-06-06 Thread Duncan Murdoch
Sys.getenv(DISPLAY) [1] 0.0.0.0:0 I'm sure this used to work, but something has changed in the last few months. Any ideas? I'm on a Mac right now that works, but it shows X11() Sys.getenv(DISPLAY) [1] /tmp/launch-OjzUQo/org.x:0 Duncan Murdoch

Re: [R-SIG-Mac] test failures

2011-06-30 Thread Duncan Murdoch
, and sometimes they don't. Duncan Murdoch Thanks #!/bin/sh -ev make -k check || exit 2 make[2]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. WARNING: ignoring environment value of R_HOME Testing examples for package 'base' Testing examples for package 'tools

Re: [R-SIG-Mac] accented vowels

2011-08-15 Thread Duncan Murdoch
as unknown, but x - list.files() Encoding(x) - UTF-8 works. However, the iconv() method should be safer. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Minor bug in Quartz sizing

2011-09-03 Thread Duncan Murdoch
On 11-09-03 5:03 PM, Kasper Daniel Hansen wrote: On Sat, Sep 3, 2011 at 12:47 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: With a current R-patched (2.13.1 Patched (2011-09-02 r56906)), the following code generates plots missing the bottom labels: par(mfrow = c(4, 5), mar = c(2.1, 2.1

Re: [R-SIG-Mac] rgl on 10.7: has anyone tried it?

2011-10-11 Thread Duncan Murdoch
rearrangements, so I don't know what is currently needed, and am unlikely to have the time to figure it out. However, if someone who does know what's going on sends me a patch that doesn't obviously break something else, I'd be happy to commit it. Duncan Murdoch BTW: why don't you just use

Re: [R-SIG-Mac] incomplete final line?

2011-11-01 Thread Duncan Murdoch
, or CR LF on Windows). Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] incomplete final line?

2011-11-02 Thread Duncan Murdoch
a blank line in each file) I don't think R has changed. I've seen that message for a long time. But perhaps source() (or whatever method you used to read the file) has changed to start using readLines. Duncan Murdoch On 11/1/11 9:41 PM, Duncan Murdoch wrote: On 11-11-01 6:27 PM, Carl Witthoft

Re: [R-SIG-Mac] finding things in R manuals

2012-02-03 Thread Duncan Murdoch
and open it, e.g. doc - function(manual=file.choose()) { system(paste('open', manual)) } Duncan Murdoch Ruth On 03/02/2012 01:14, David Winsemius wrote: On Feb 2, 2012, at 2:37 PM, Ruth Ripley wrote: Dear list, Would it be possible to include the pdf versions of the R manuals

Re: [R-SIG-Mac] Fwd: Re: [R] Package seems to be present but library don't find it

2012-04-03 Thread Duncan Murdoch
On 03/04/2012 1:04 PM, Berend Hasselman wrote: On 03-04-2012, at 18:50, Duncan Murdoch wrote: This is a message from R-help about installing a package in OSX. The NAMESPACE file contains an error, but the user didn't see the error message when he installed from the Mac GUI. Is R.app

Re: [R-SIG-Mac] Fwd: Re: [R] Package seems to be present but library don't find it

2012-04-04 Thread Duncan Murdoch
On 12-04-03 3:29 PM, Simon Urbanek wrote: On Apr 3, 2012, at 3:09 PM, Berend Hasselman wrote: On 03-04-2012, at 20:54, Duncan Murdoch wrote: On 03/04/2012 1:04 PM, Berend Hasselman wrote: On 03-04-2012, at 18:50, Duncan Murdoch wrote: This is a message from R-help about installing

Re: [R-SIG-Mac] Vignette package 'parallel'?

2012-04-15 Thread Duncan Murdoch
(package=parallel)'. Do you have the vignttes from grid, or the one from utils? If not, you'll need to re-install R. (I just installed the binary R-2.15.0.pkg from CRAN, and didn't get those vignettes: so it looks like the current binary isn't installing them.) Duncan Murdoch

Re: [R-SIG-Mac] Vignette package 'parallel'?

2012-04-15 Thread Duncan Murdoch
don't usually build on a Mac, but there is a make target called vignettes, so perhaps you need to explicitly make that. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

[R-SIG-Mac] libiconv missing for R-devel build

2012-05-30 Thread Duncan Murdoch
... no checking for iconvlist... no checking for iconv... no, consider installing GNU libiconv Can anyone let me know if the advice to install libiconv is really correct, and if so, how to do that? I'm on OS X 10.6.8. Duncan Murdoch ___ R-SIG-Mac

Re: [R-SIG-Mac] rgl broken with 2.15.1?

2012-07-12 Thread Duncan Murdoch
64 bit will fall back to that if aglrgl.so is not found. I don't know what's causing Michael's problem and doubt if the same workaround would help, but it probably wouldn't hurt. Duncan Murdoch On Jun 29, 2012, at 18:39 , Michael Kubovy wrote: sessionInfo() R version 2.15.1 (2012-06-22

Re: [R-SIG-Mac] rgl configure error: missing required library GL

2012-07-16 Thread Duncan Murdoch
script; after unpacking the source, run ./configure --help to see what's possible. Duncan Murdoch I'm running R 2.15.0 on OSX 10.7.4. GCC is: i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.1.00). Is there something wrong with OpenGL on Lion

Re: [R-SIG-Mac] rgl configure error: missing required library GL

2012-07-17 Thread Duncan Murdoch
, but maybe it's a problem with the makefiles or the compiler. If you can suggest any fixes for this, I'd appreciate it. (The newest OSX that I have is 10.6.8.) Duncan Murdoch $ find -name \*.o |xargs file rgl/src/ABCLineSet.o:Mach-O 64-bit object x86_64 rgl/src/AGL/x11gui.o:Mach-O 64-bit

Re: [R-SIG-Mac] rgl configure error: missing required library GL

2012-07-23 Thread Duncan Murdoch
in the error message. rgl will fall back to the X11 library, which still works. Duncan Murdoch Mark Grimes library (rgl) Error : .onLoad failed in loadNamespace() for 'rgl', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Library

Re: [R-SIG-Mac] rgl configure error: missing required library GL

2012-07-23 Thread Duncan Murdoch
On 23/07/2012 2:31 PM, peter dalgaard wrote: On Jul 23, 2012, at 19:13 , Duncan Murdoch wrote: On 23/07/2012 12:55 PM, Grimes Mark wrote: I wonder if this is related. Package 'rgl' failed to load in an error similar to one I've had previously. It was working for a while and now

Re: [R-SIG-Mac] Building package using RTools in OS X

2012-09-14 Thread Duncan Murdoch
instructions on his website http://r.research.att.com/. You'll probably have to download the compiler suite, but you don't need everything else that's in Rtools, because OSX already has Unix tools. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r

Re: [R-SIG-Mac] Contour lines not plotting in correct position

2012-10-25 Thread Duncan Murdoch
that. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] What's up with RSwitch

2012-11-16 Thread Duncan Murdoch
-- it seems RSwitch is broken there. I zipped RSwitch.app and put it here: http://cbio.mskcc.org/~lianos/files/bioc/RSwitch.app.zip So you can try that if you like -- I'm going to take that down by, say, some time tomorrow, though. or you could check archive.org. Duncan Murdoch

Re: [R-SIG-Mac] Saving or copying graphics from Quartz returns empty file

2013-01-29 Thread Duncan Murdoch
device, those choices may be different. Duncan Murdoch When I save a graphic, the process either crashes R, or if it saves a file, when I open it I get a blank file or an error message that reads The file Rplot.pdf could not be opened. When I try to copy the graphic instead to paste into any

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-04 Thread Duncan Murdoch
On 13-02-04 9:06 PM, Bryan Hanson wrote: I don't think I've seen this reported yet (apologies if I missed it). The version on CRAN is out of date. You want to get the one from R-forge. Duncan Murdoch There has previously been a problem similar to this, which was fixed by removing

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-05 Thread Duncan Murdoch
by configuring with the configure option install.packages(rgl, ..., configure.args=--disable-cocoa) and then you should be able to get the install to complete, but it might be better to figure out why freetype-config isn't working for you. Duncan Murdoch

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-05 Thread Duncan Murdoch
On 05/02/2013 10:46 AM, Prof Brian Ripley wrote: On 05/02/2013 13:25, Duncan Murdoch wrote: On 13-02-05 8:07 AM, Bryan Hanson wrote: Thanks for taking the time to look at this carefully Duncan. I don't see the warning you mention, and I don't see the string R_pretty0 in the log either. I'm

Re: [R-SIG-Mac] installing rgl with the 3.0 RC

2013-02-05 Thread Duncan Murdoch
the --disable-cocoa any more, but you will still need to match 32 vs 64 bits. Duncan Murdoch On Feb 5, 2013, at 11:01 AM, Prof Brian Ripley rip...@stats.ox.ac.uk wrote: On 05/02/2013 15:56, Bryan Hanson wrote: Is that something I can control? I've never had to worry about that before, never run

Re: [R-SIG-Mac] R 3.0, lme4, and the oft unloved Mac OS

2013-04-10 Thread Duncan Murdoch
things like lme4.test() et alia... See ?tools::testInstalledPackage. You can do better tests on a tarball because some test material is not installed by default. And you can find things like this from the R command prompt by ??tests, or using the sos package and ???tests. Duncan Murdoch

Re: [R-SIG-Mac] rgl crashes after one successful draw on R.app

2013-05-29 Thread Duncan Murdoch
anyone reproduce it while running in gdb or some other debugger? Duncan Murdoch library(rgl) showSomething - function() { open3d() points3d(rnorm(10),rnorm(10),rnorm(10)) axes3d() title3d('main','sub','xlab','ylab','zlab') } showSomething() # works

[R-SIG-Mac] Bug in data editor

2013-09-28 Thread Duncan Murdoch
Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Compile errors on .tex file at \begin{Soutput} points

2013-10-20 Thread Duncan Murdoch
. Search for the string darkred in every file on your disk, and see which ones might be relevant. Duncan Murdoch ? [1] ! LaTeX Error: Undefined color `darkred'. I can not figure out where Latex is thinking there is a darkred colour associated with the following code. Here is the .tex code

Re: [R-SIG-Mac] problem with plot math

2014-01-29 Thread Duncan Murdoch
lines at the bottom, 4 on the left and top, and 2 on the right. Duncan Murdoch Thank you On 29 Jan 2014, at 11:52, Ingmar Visser i.vis...@uva.nl wrote: Your first example works for me with nice labels including x bar etc, using this configuration: sessionInfo() R version 3.0.2 (2013-09-25

Re: [R-SIG-Mac] R stops abruptly applying textures in rgl

2014-03-19 Thread Duncan Murdoch
/splash.png' for reading This looks like an rgl bug on the Mac. I'll take a look. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R stops abruptly applying textures in rgl

2014-03-20 Thread Duncan Murdoch
if the extra info lets me reproduce it. Duncan Murdoch ` , | version |_ | platform x86_64-apple-darwin10.8.0 | arch x86_64 | os darwin10.8.0 | system x86_64, darwin10.8.0 | status Patched | major 3 | minor 0.3 | year

Re: [R-SIG-Mac] Unexpected behavior of R round function on Mac

2014-04-11 Thread Duncan Murdoch
other problems. Duncan Murdoch On 11 Apr 2014, at 10:42 , Per Nielsen evil...@gmail.com wrote: Hi all I have encountered some strange/wrong behavior of the round function in R. This is the behavior on my mac laptop: R.version _ platform x86_64-apple-darwin13.0.2

Re: [R-SIG-Mac] [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread Duncan Murdoch
pre-release versions. Duncan Murdoch Thanks again. Regards, Marc On Apr 14, 2014, at 7:28 AM, Martin Maechler maech...@stat.math.ethz.ch wrote: Marc Schwartz marc_schwa...@me.com on Sun, 13 Apr 2014 10:22:55 -0500 writes: [on the R-SIG-Mac mailing list] : Hi all, With R

[R-SIG-Mac] Compling rgl for Mavericks

2014-04-26 Thread Duncan Murdoch
in the standard collection, or online somewhere? Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] package.skeleton

2014-06-15 Thread Duncan Murdoch
: namespace:traffic K(3.2,1) [1] 0.4207143 In this case it worked, because q was 3.2. Duncan Murdoch As I was developing the script, I found that I needed ‘as.numeric' command. I use it throughout the script. Removing ‘q = as.numeric(q)’ from ‘K’ gives the same Error message

Re: [R-SIG-Mac] rgl for R-devel

2014-07-19 Thread Duncan Murdoch
On 19/07/2014, 4:42 AM, Duncan Murdoch wrote: On 18/07/2014, 8:18 PM, Simon Urbanek wrote: Duncan, I didn't look at the code, but the approach seems strange - if you use something from the GLKit framework then the include should be #include GLKit/GLKMathUtils.h without specifying -I

Re: [R-SIG-Mac] rgl for R-devel

2014-07-19 Thread Duncan Murdoch
in another email, so I don't recommend using this version: but I'd appreciate hearing if it fixes your problem. Duncan Murdoch Roger Koenker rkoen...@illinois.edu On Jul 18, 2014, at 8:07 PM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 18/07/2014, 4:41 PM, Roger Koenker wrote: I'm

Re: [R-SIG-Mac] rgl for R-devel

2014-07-19 Thread Duncan Murdoch
On 19/07/2014, 10:31 AM, Simon Urbanek wrote: On Jul 19, 2014, at 6:05 AM, Duncan Murdoch murdoch.dun...@gmail.com wrote: On 19/07/2014, 4:42 AM, Duncan Murdoch wrote: On 18/07/2014, 8:18 PM, Simon Urbanek wrote: Duncan, I didn't look at the code, but the approach seems strange - if you

[R-SIG-Mac] Threads in R.app?

2014-07-23 Thread Duncan Murdoch
order. Is this the case? Is there any way I can force the rgl window to have its messages received in the same thread? Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Difference between Terminal output and GUI output.

2014-07-27 Thread Duncan Murdoch
in your workspace that is interfering with normal evaluation. Duncan Murdoch debug at GetCL.R#4: cat(out, \n) Browse[2] 35.791 debug at GetCL.R#3: out - round(((sum((XX[3, , i] - XX[10, , i])^2))^0.5 + (sum((XX[2, , i] - XX[10, , i])^2))^0.5)/2, 3) Browse[2] debug at GetCL.R#4: cat(out

[R-SIG-Mac] Clipboard problems

2014-09-03 Thread Duncan Murdoch
) with pbpaste. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Help with windowWillClose notification

2014-09-04 Thread Duncan Murdoch
GLView object as a delegate to receive that notification, I needed to declare that it supported the NSWindowDelegate protocol when it was declared, and needed to tell the window to use it as a delegate via [osxWindow setDelegate:view]. Duncan Murdoch On 21/08/2014, 8:03 AM, Duncan Murdoch wrote: I'm

Re: [R-SIG-Mac] sh: convert: command not found

2014-10-25 Thread Duncan Murdoch
On 24/10/2014, 9:03 AM, Simon Urbanek wrote: On Oct 24, 2014, at 7:36 AM, peter dalgaard pda...@gmail.com wrote: On 24 Oct 2014, at 12:55 , Duncan Murdoch murdoch.dun...@gmail.com wrote: On 24/10/2014, 1:37 AM, Simon Urbanek wrote: On Oct 24, 2014, at 12:22 AM, Emma Sherratt emma.sherr

Re: [R-SIG-Mac] How to choose between the CRAN release of OSX R vs the Brew release?

2014-11-12 Thread Duncan Murdoch
On 12/11/2014 11:44 AM, Vincent Goulet wrote: I'm pretty sure that the advice you will mostly find here is to use the CRAN release. This is certainly the version that is supported. Yes, most people like to use a version that doesn't crash. Duncan Murdoch v. Le 2014-11-12 à 09:35, Grant

Re: [R-SIG-Mac] problem with character encoding in file names in R 3.2

2015-05-03 Thread Duncan Murdoch
create a second folder with accents, as you suggested. Thanks, I'll see if I can reproduce this. Duncan Murdoch ## dir.create(bébé) # folder created within working directory # in addition, 2 folders already exist in this working directory, one with accents, été, and one without, ete

Re: [R-SIG-Mac] problem with character encoding in file names in R 3.2

2015-05-03 Thread Duncan Murdoch
manually typing the full string should produce the same result as constructing it via paste(). (But I am not sure that paste() is producing what you want.) Thanks. Duncan Murdoch save(a, file=paste(Input, bé.Rda »)) #2 save(a, file=paste(folder1, bé.Rda »)) #3 save(a, file=paste(folder1, be.Rda

Re: [R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread Duncan Murdoch
be nightly builds available tomorrow. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Bug related to locale changes.

2015-06-08 Thread Duncan Murdoch
On 08/06/2015 8:37 AM, Berend Hasselman wrote: On 08-06-2015, at 13:40, Duncan Murdoch murdoch.dun...@gmail.com wrote: I posted this to R-devel yesterday; from responses received, it appears to be OSX-specific (maybe Mavericks-specific). In an R session started from the terminal with R

Re: [R-SIG-Mac] Unexpected output from round()

2015-06-12 Thread Duncan Murdoch
On 12/06/2015 8:53 PM, John Maindonald wrote: I cannot reproduce it (R version 3.2.0 Patched (2015-04-19 r68206)) in a terminal window: If you set options(digits=16) you'll get it. It's just FAQ 7.31, and the fact that R only stores 15 or 16 digit accuracy. Duncan Murdoch dput(pi

Re: [R-SIG-Mac] sort() under terminal

2015-10-12 Thread Duncan Murdoch
4.0 > status > major 3 > minor 2.2 > year 2015 > month 08 > day14 > svn rev69053 > language R > version.string R version 3.2.2 (2015-08-14) > nickname Fire Safety > > > Could anyone point me

Re: [R-SIG-Mac] rgl crashes R.app in El Capitan

2015-10-13 Thread Duncan Murdoch
X 10.9.5 (Mavericks), and it doesn't crash. Since you're using the latest rgl, you must have built it yourself -- CRAN doesn't distribute binaries for it (at least for Mavericks). Did you get any errors or warnings during compilation? Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not. (Duncan Murdoch)

2016-01-02 Thread Duncan Murdoch
-magnification. I don't think this is present in the current rgl. I don't remember if it was there in earlier versions, but your verbose error message doesn't show any rgl activity as far as I can see. Duncan Murdoch Verbose error 2 in MacGUI window: 2016-01-01 21:33:36.342 R[2942:183303

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not. (Duncan Murdoch)

2016-01-02 Thread Duncan Murdoch
On 02/01/2016 5:47 PM, David Winsemius wrote: On Jan 2, 2016, at 10:34 AM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote: On 02/01/2016 12:47 PM, Joseph Kunkel wrote: Duncan, The rgl (binary) download says it, ver 0.95.1201, is as up to date as binaries are for my MacBook Pro retina

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not.

2015-12-31 Thread Duncan Murdoch
think the type sloppiness could be a cause of the error (I think it would fail for all servers if so), and I can't spot the run-time sloppiness. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not.

2015-12-31 Thread Duncan Murdoch
On 31/12/2015 1:06 PM, David Winsemius wrote: On Dec 31, 2015, at 3:43 AM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote: On 30/12/2015 9:40 PM, David Winsemius wrote: [lots deleted] So I guess the question is ... why is the build process for the Mavericks/Yosemite/El Capitan ma

Re: [R-SIG-Mac] (old) rgl package crashes MacGUI using R 3.2.3 in El Cap, new compiled one does not.

2016-01-01 Thread Duncan Murdoch
On 31/12/2015 6:43 AM, Duncan Murdoch wrote: On 30/12/2015 9:40 PM, David Winsemius wrote: [lots deleted] So I guess the question is ... why is the build process for the Mavericks/Yosemite/El Capitan machines still failing to produce a current (working) version of rgl? I think it does

Re: [R-SIG-Mac] R stats: not recognising 'F' as 'FALSE'

2016-02-11 Thread Duncan Murdoch
you want FALSE. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R GUI is freezing

2016-02-11 Thread Duncan Murdoch
Have you tried recent nightly builds from http://r.research.att.com/? Some bugs with the data editor were recently fixed; I think those were specific to it, but maybe more got fixed at the same time. Duncan Murdoch On 11/02/2016 10:07 AM, Chris Swan wrote: No - never got a solution

Re: [R-SIG-Mac] R GUI is freezing

2016-02-11 Thread Duncan Murdoch
and you didn't follow it. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R GUI is freezing

2016-02-13 Thread Duncan Murdoch
. Duncan Murdoch On Duncans advice (Feb 11, 2 days ago) I tried the suggested nightly build and then ran one of my R scripts from the initial directory I had set in the R-gui preferences menu R-startup menu which was still the default det from the previous build. R opened

Re: [R-SIG-Mac] Startup problem with manipulate

2016-02-23 Thread Duncan Murdoch
On 23/02/2016 3:50 PM, Iryna Nikolayeva wrote: Hi all, every time I start up Studio, I get the following error message: This is an RStudio problem, so you may have to work with them to solve it. But I'd suggest updating R (the current version is 3.2.3), which may help. Duncan Murdoch

Re: [R-SIG-Mac] glmnet install error R-devel 3.3, Mac OS 10.11.3

2016-01-25 Thread Duncan Murdoch
compilers that Simon has put together. I think his newest is gfortran 4.8.2, not 5.2.0, but I'm having trouble finding the download page now... Duncan Murdoch Details below - any advice would be much appreciated. Many thanks Davis After calling "install.packages("glmnet")&q

Re: [R-SIG-Mac] R crashes when using edit() or fix()

2016-01-26 Thread Duncan Murdoch
win13.4.0 Thanks for any insights or theories; David. No insight or theories, but the website works for me, and the bug in editing a dataframe is fixed. Duncan Murdoch > > Cheers, > Simon > > >> On Jan 26, 2016, at 1:30 PM, Kamila Naxerova <knaxer...@partners.org> wrote:

Re: [R-SIG-Mac] R GUI is freezing

2016-02-18 Thread Duncan Murdoch
On 18/02/2016 3:02 PM, peter dalgaard wrote: On 18 Feb 2016, at 20:45 , Duncan Murdoch <murdoch.dun...@gmail.com> wrote: You need to give version numbers, and an exact sequence of operations to reproduce the crash. Then it'll likely be fixed. ...if we can reproduce it on one

Re: [R-SIG-Mac] download R 3.2.1 on mac OS

2016-08-26 Thread Duncan Murdoch
that, you're probably using RStudio, which doesn't display download.file output properly. In other front ends this would appear as a progress report. Duncan Murdoch , also I tried fileUrl<- "https://data.baltimorecity.gov/api/views/dz54-2aru/rows.csv?accessType=DOWNLOAD; download.file

Re: [R-SIG-Mac] Problem using the R.app GUI Package Installer

2016-09-28 Thread Duncan Murdoch
open. But in general, to change the default mirror in R.app, run chooseCRANmirror() in the console. I forget whether that changes it for the session or permanently. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.eth

Re: [R-SIG-Mac] ggviz stats?

2017-01-12 Thread Duncan Murdoch
ke you had a typo in the name. Duncan Murdoch phil On 1/9/17 8:09 AM, Duncan Murdoch wrote: On 13/12/2016 7:59 PM, Philip Cannata wrote: What's the status of ggviz, I've tried installing it on my Mac, however, I get the following: install.packages("ggviz") Warning

Re: [R-SIG-Mac] ggviz stats?

2017-01-09 Thread Duncan Murdoch
r a simple install on my Mac, so I'd suspect you're using an old version of Mac OS for which packages aren't being built, or a CRAN mirror that's not up to date. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.

Re: [R-SIG-Mac] Permanently fix R to open Help page in html

2017-07-10 Thread Duncan Murdoch
= ‘html’) However after that when I start R (from Terminal) I get below error on loading R Error: 1:20: unexpected input 1: options(help_type = ? ^ Those don't look like ASCII quotes. Use the R.app editor, not Textedit, and it won't put in funny "smart quotes"

Re: [R-SIG-Mac] rJava stops loading since I upgraded R to 3.4.0

2017-05-23 Thread Duncan Murdoch
is in the patch level z, where the version number is x.y.z, you can usually use the old version). Duncan Murdoch R version : R version 3.4.0 (2017-04-21) -- "You Stupid Darkness" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64

Re: [R-SIG-Mac] istate CRAN mirror not working - unable to use .Rprofile to change

2017-06-08 Thread Duncan Murdoch
If you are using R.app, you can also set the mirror in the Preferences menu. Perhaps this setting overrides the .Rprofile setting. Duncan Murdoch On 08/06/2017 5:05 AM, Michael Hall wrote: I started getting errors installing packages using my default repository instate… Warning: unable

Re: [R-SIG-Mac] istate CRAN mirror not working - unable to use .Rprofile to change

2017-06-08 Thread Duncan Murdoch
On 08/06/2017 5:50 PM, Michael Hall wrote: On Jun 8, 2017, at 5:53 AM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote: If you are using R.app, you can also set the mirror in the Preferences menu. Perhaps this setting overrides the .Rprofile setting. I was using the app and wasn’t

Re: [R-SIG-Mac] segfault on R v. 3.4.1

2017-09-14 Thread Duncan Murdoch
of your system. Four years old doesn't seem old, but it's long enough for hardware problems to develop. Duncan Murdoch Do any of you folks know what might’ve happened? I’ve d/l’d and installed the 3.4.1. Mac binary from CRAN three times, and each time I get the text below. Any help

Re: [R-SIG-Mac] package or namespace load failed for ‘ks’

2017-11-13 Thread Duncan Murdoch
xquartz.org. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] ifelse script

2017-10-25 Thread Duncan Murdoch
icdfrrcond17 == 1 | icdfrrcond18 == 1 | icdfrrcond19 == 1 | icdfrrcond20 == 1, 1, 0) Duncan Murdoch This is the script generated by R Commander: mortprres0515sle$icdfrischhrtdis <- with(mortprres0515sle, ifelse(icdfrrcond1 == 1 | icdfrrcond2 == 1 | icdfrrcond3 == 1 | icdfrrcond4 ==

Re: [R-SIG-Mac] Updating some packages fails

2018-01-15 Thread Duncan Murdoch
to follow Ben's instructions, you'll just have to wait until Simon's binary build makes it onto CRAN. Duncan Murdoch Manuel 2018-01-15 10:40 GMT-06:00 Ben Tupper <btup...@bigelow.org>: Hi, sf (and many other spatial packages) depend upon gdal ( http://www.gdal.org/) being installed o

Re: [R-SIG-Mac] R 3.4.4 and 3.5 (Mac) crash when loading a .R file

2018-07-05 Thread Duncan Murdoch
is for binary images of workspaces, typically called something like .RData. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] Blank help window

2018-10-18 Thread Duncan Murdoch
) URLencode(url) else url) ... opens the blank help window. That's the issue then. Your system doesn't support "localhost", and R.app assumes it will. I don't know enough about MacOS to guess a cause or a remedy, but that's what you need to fix. Duncan Murdoch Finall

Re: [R-SIG-Mac] Blank help window

2018-10-18 Thread Duncan Murdoch
type "c". This should open the same help page in the internal browser. It might show a blank page, or the regular help page: either one would tell us something. Duncan Murdoch debug(utils:::print.help_files_with_topic) help("help") debugging in: print.help_files_with_

Re: [R-SIG-Mac] Blank help window

2018-10-17 Thread Duncan Murdoch
stom.print", "help-files", x) invisible(x) } If I debug this and try browseURL(x) after x is modified, I see help in my usual browser. If I continue to the .Call(), it appears in the usual R.app browser. Do you see something similar? Duncan Murdoch R version 3.5.1 (2018-07-02)

Re: [R-SIG-Mac] legend function and Inf warnings

2018-10-20 Thread Duncan Murdoch
lue that you can distinguish from a real minimum... Sorry, no comment on your other question. Duncan Murdoch 2. I use the following legend that returns a plot that I am happy with and no errors: legend("topright", title = "", legend = c(

Re: [R-SIG-Mac] How can I find the "sh" application used by "R CMD check" on a Mac?

2019-02-19 Thread Duncan Murdoch
to allow this once but not permanently.  To allow it permanently, I need to know where it is on my hard drive. From a console, run "which sh". I get "/bin/sh". Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] segfault with raster package

2019-12-16 Thread Duncan Murdoch
ckage is common in macOSX or if there is something special for me. library(raster) works fine for me. This loads 3.0-7. I'm on MacOS 10.13.6, likely older than whatever you are using. Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.

Re: [R-SIG-Mac] damned Catalina

2019-12-18 Thread Duncan Murdoch
on High Sierra). Duncan Murdoch Thanks for the collaboration Bruno Il giorno 18 dic 2019, alle ore 14:37, Rainer M Krug ha scritto: Just works out of the box, i.e. the cloud repo. PS: please CC the list in - thanks On 18 Dec 2019, at 14:34, bruno apolloni mailto:apoll...@di.unimi.it>>

[R-SIG-Mac] R CMD check warning in 4.0.0 RC

2020-04-20 Thread Duncan Murdoch
the default, so probably this note should not appear (even though the message is true). Duncan Murdoch ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac

Re: [R-SIG-Mac] R-SIG-Mac Digest, Vol 205, Issue 13

2020-04-02 Thread Duncan Murdoch
That lists "base" as a package, as well as the other base and recommended packages. That's not what Dr. Lisse was looking for: he wanted "all user installed (additional) packages, ie not the ones that come with R?". Duncan Murdoch On 02/04/2020 10:47 a.m.,

Re: [R-SIG-Mac] How to add variables to a vector

2020-03-28 Thread Duncan Murdoch
On 28/03/2020 4:17 p.m., David wrote: If I have a vector created like x <- c(5,1,9,3), how can I add values to it later?  That seems simple, but I don't find the answer in either of my Dalgaard or Crawley books, or in the help functions.  Thanks. This question belongs on R-help: nothing to do

Re: [R-SIG-Mac] Transitioning from Mac to LInux?

2020-04-01 Thread Duncan Murdoch
or some other Linux on it. I think at that age Apple is no longer providing upgrades, but I just put Ubuntu on a 2008 iMac, and it works well. (I needed to upgrade the memory, but that just cost $40 for 4 GB.) So I got a $40 desktop, with a nice screen. Duncan Murdoch

Re: [R-SIG-Mac] Homebrew

2020-04-02 Thread Duncan Murdoch
d run update.packages(checkBuilt = TRUE) R will re-install everything that was originally installed under an earlier version. Duncan Murdoch I could then construct the below file automagically, and if I was really bothered and bored find out how to make Homebrew pre/post install scripts to au

Re: [R-SIG-Mac] obsolete LaTeX software in "R CMD check" on Mac?

2020-05-12 Thread Duncan Murdoch
weave.sty since 2013, so it's nothing new on R's end. Duncan Murdoch         * "In a current tex system \textasciigrave should work with your families - they don't have the glyph but latex will fall back without error. In older systems it could give an error." See: https:

Re: [R-SIG-Mac] plot window not showing most recent plot?

2020-09-05 Thread Duncan Murdoch
Which front end are you using? The cmd-] and cmd-[ don't do anything in the ones I'm using. Duncan Murdoch On 05/09/2020 8:23 a.m., Timothy Bates wrote: In R version: R version 4.0.2 (2020-06-22), I’m seeing the plot window not advance when a new ggplot is drawn. calls to plot() advance

[R-SIG-Mac] bzip2 configure error

2020-08-28 Thread Duncan Murdoch
onst char *)' [-Werror,-Wimplicit-function-declaration] exit(strcmp(ver, "1.0.6") < 0); ^ conftest.c:251:10: note: include the header or explicitly provide a declaration for 'strcmp' 1 warning and 2 errors generated. Suggesti

Re: [R-SIG-Mac] bzip2 configure error

2020-08-29 Thread Duncan Murdoch
I seem to have got past this error by reinstalling Xcode. I'm not sure what went wrong with the old install; I'm pretty sure I did an R-devel build since installing Catalina. Duncan Murdoch On 28/08/2020 10:41 a.m., Duncan Murdoch wrote: I'm trying to build R-devel in Catalina for the first

Re: [R-SIG-Mac] crash due to rgl and base graphics conflict

2020-05-29 Thread Duncan Murdoch
in the call stack, but libXplugin is there. Mine is "XQuartz 2.7.11 (xorg-server 1.18.4)". Duncan Murdoch On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote: R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R Foundation for Statistical Computing Pl

Re: [R-SIG-Mac] [External] Re: crash due to rgl and base graphics conflict

2020-05-29 Thread Duncan Murdoch
is most likely to help, but if it doesn't, I'm not sure what I could suggest: I don't have Catalina. Duncan Murdoch from the Terminal App: The Apple Crash Report is in the attached tmp.txt I didn't send it to Apple. R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R

Re: [R-SIG-Mac] [External] Re: crash due to rgl and base graphics conflict

2020-05-29 Thread Duncan Murdoch
anything in R, but allows you to call rglwidget() for a display in a browser. Duncan Murdoch On Fri, May 29, 2020 at 1:51 PM Duncan Murdoch wrote: On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote: I have the same Xquartz as you. I'd guess it should be updated. Generally XQuartz needs

Re: [R-SIG-Mac] [External] Re: crash due to rgl and base graphics conflict

2020-08-03 Thread Duncan Murdoch
With great trepidation, I installed Catalina. I saw the same crash as reported. Then I reinstalled Xquartz, shut down the Xquartz that was still running (should have done that in the other order!), and tried again: no crash. Hope it stays fixed! Duncan Murdoch On 03/08/2020 9:25 a.m

Re: [R-SIG-Mac] [External] Re: crash due to rgl and base graphics conflict

2020-08-03 Thread Duncan Murdoch
I just got a message from someone else using Catalina 10.15.5 who still gets a crash from library(rgl) plot(1:10) I don't have Catalina, and haven't seen it. Has anyone else? Duncan Murdoch On 31/05/2020 4:44 p.m., Richard M. Heiberger wrote: I upgraded last night to Catalina 10.15.5

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