Re: [R-SIG-Mac] Update of RcppParallel failed

2018-02-14 Thread Marc Girondot via R-SIG-Mac 

Hi Keith,

When I try just now, a new version of RcppParallel was available 
(4.3.20.2; previous one was 4.3.20.1):


essai de l'URL 
'https://cran.r-project.org/src/contrib/RcppParallel_4.3.20.2.tar.gz'

And it compiles without problem !

So the problem is solved !

Thanks

Marc




Le 14/02/2018 à 14:58, Keith O'Hara a écrit :

This looks like an issue to bring up with the Rcpp guys, not R… but can you 
provide a full printout of the error? I’m guessing this failed when compiling a 
C file, not C++.



On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac 
 wrote:

This morning I had an update to apply for RcppParallel but it failed

Here are some information:


update.packages()

RcppParallel :
  Version 4.3.20 installed in 
/Library/Frameworks/R.framework/Versions/3.5/Resources/library
  Version 4.3.20.1 available at https://cran.r-project.org

During instal, I had this error

error: invalid argument '-std=gnu++11' not allowed with 'C'

It failed with the two versions of clang that I have installed:

clang++ --version
clang version 5.0.1 (tags/RELEASE_501/final)
Target: x86_64-apple-darwin17.4.0
Thread model: posix
InstalledDir: /usr/local/opt/llvm/bin

or

clang++ --version
Apple LLVM version 9.0.0 (clang-900.0.39.2)
Target: x86_64-apple-darwin17.4.0
Thread model: posix
InstalledDir: 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin

Do you have some idea about what's happened and how to solve this problem ?

Thanks

Marc

_

Information on my R version:


R.Version()

$platform
[1] "x86_64-apple-darwin15.6.0"

$arch
[1] "x86_64"

$os
[1] "darwin15.6.0"

$system
[1] "x86_64, darwin15.6.0"

$status
[1] "Under development (unstable)"

$major
[1] "3"

$minor
[1] "5.0"

$year
[1] "2018"

$month
[1] "02"

$day
[1] "13"

$`svn rev`
[1] "74247"

$language
[1] "R"

$version.string
[1] "R Under development (unstable) (2018-02-13 r74247)"

$nickname
[1] "Unsuffered Consequences"

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Re: [R-SIG-Mac] Update of RcppParallel failed

2018-02-14 Thread Kevin Ushey 
RcppParallel is indeed a package produced and maintained by the Rcpp
core team, but RcppParallel is now considered ORPHANED on CRAN:

https://cran.r-project.org/package=RcppParallel

This is in spite of my repeated attempts to submit updates of this
package to CRAN (as the package maintainer); submissions which were
ignored and received no response from the CRAN team. This also
includes posts I made to the R-package-devel mailing list, where I
tried to ask what I needed to do to get RcppParallel back on CRAN.
Also ignored.

Professor Ripley and the CRAN team are currently the 'de facto'
maintainers of the version of RcppParallel you see on CRAN. I guess
you can ask them if you're having trouble installing the CRAN version,
until we've sorted out CRAN maintainership of the package.

Thanks,
Kevin

On Wed, Feb 14, 2018 at 6:46 AM, Keith O'Hara  wrote:
> (It’s under the RcppCore banner, so I figured it was Dirk and co.)
>
> The package installed fine for me (on a Mac), but the build doesn’t seem to 
> import the CC and CXX settings from ~.R/Makevars or Makeconf for some reason. 
> Bug on my end, or is there a reason for this?
>
>> On Feb 14, 2018, at 9:29 AM, Prof Brian Ripley  wrote:
>>
>> On 14/02/2018 14:01, Keith O'Hara wrote:
>>> This looks like an issue to bring up with the Rcpp guys, not R… but can you 
>>> provide a full printout of the error? I’m guessing this failed when 
>>> compiling a C file, not C++.
>>
>> RcppParalllel is not part of Rcpp, and orphaned.  It seems to be a 
>> mac-specific issue (it is not happening on other platforms with clang).
>>
>> There is a bug in src/Makevars.  The line
>>
>> PKG_CPPFLAGS += $(CXX1XSTD) -I../inst/include/
>>
>> should refer to PKG_CXXFLAGS.  I'll fix that after testing as version 
>> 4.3.20.2.
>>
>>
>>
>>
 On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac 
  wrote:

 This morning I had an update to apply for RcppParallel but it failed

 Here are some information:

> update.packages()
 RcppParallel :
  Version 4.3.20 installed in 
 /Library/Frameworks/R.framework/Versions/3.5/Resources/library
  Version 4.3.20.1 available at https://cran.r-project.org
 
 During instal, I had this error

 error: invalid argument '-std=gnu++11' not allowed with 'C'

 It failed with the two versions of clang that I have installed:

 clang++ --version
 clang version 5.0.1 (tags/RELEASE_501/final)
 Target: x86_64-apple-darwin17.4.0
 Thread model: posix
 InstalledDir: /usr/local/opt/llvm/bin

 or

 clang++ --version
 Apple LLVM version 9.0.0 (clang-900.0.39.2)
 Target: x86_64-apple-darwin17.4.0
 Thread model: posix
 InstalledDir: 
 /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin

 Do you have some idea about what's happened and how to solve this problem ?

 Thanks

 Marc

 _

 Information on my R version:

> R.Version()
 $platform
 [1] "x86_64-apple-darwin15.6.0"

 $arch
 [1] "x86_64"

 $os
 [1] "darwin15.6.0"

 $system
 [1] "x86_64, darwin15.6.0"

 $status
 [1] "Under development (unstable)"

 $major
 [1] "3"

 $minor
 [1] "5.0"

 $year
 [1] "2018"

 $month
 [1] "02"

 $day
 [1] "13"

 $`svn rev`
 [1] "74247"

 $language
 [1] "R"

 $version.string
 [1] "R Under development (unstable) (2018-02-13 r74247)"

 $nickname
 [1] "Unsuffered Consequences"

 ___
 R-SIG-Mac mailing list
 R-SIG-Mac@r-project.org
 https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>> ___
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac@r-project.org 
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac 
>>> 
>>
>>
>> --
>> Brian D. Ripley,  rip...@stats.ox.ac.uk 
>> 
>> Emeritus Professor of Applied Statistics, University of Oxford
>>
>> ___
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org 
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac 
>> 
>
> [[alternative HTML version deleted]]
>
> ___
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Re: [R-SIG-Mac] Update of RcppParallel failed

2018-02-14 Thread Keith O'Hara 
(It’s under the RcppCore banner, so I figured it was Dirk and co.)

The package installed fine for me (on a Mac), but the build doesn’t seem to 
import the CC and CXX settings from ~.R/Makevars or Makeconf for some reason. 
Bug on my end, or is there a reason for this?

> On Feb 14, 2018, at 9:29 AM, Prof Brian Ripley  wrote:
> 
> On 14/02/2018 14:01, Keith O'Hara wrote:
>> This looks like an issue to bring up with the Rcpp guys, not R… but can you 
>> provide a full printout of the error? I’m guessing this failed when 
>> compiling a C file, not C++.
> 
> RcppParalllel is not part of Rcpp, and orphaned.  It seems to be a 
> mac-specific issue (it is not happening on other platforms with clang).
> 
> There is a bug in src/Makevars.  The line
> 
> PKG_CPPFLAGS += $(CXX1XSTD) -I../inst/include/
> 
> should refer to PKG_CXXFLAGS.  I'll fix that after testing as version 
> 4.3.20.2.
> 
> 
> 
> 
>>> On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac 
>>>  wrote:
>>> 
>>> This morning I had an update to apply for RcppParallel but it failed
>>> 
>>> Here are some information:
>>> 
 update.packages()
>>> RcppParallel :
>>>  Version 4.3.20 installed in 
>>> /Library/Frameworks/R.framework/Versions/3.5/Resources/library
>>>  Version 4.3.20.1 available at https://cran.r-project.org
>>> 
>>> During instal, I had this error
>>> 
>>> error: invalid argument '-std=gnu++11' not allowed with 'C'
>>> 
>>> It failed with the two versions of clang that I have installed:
>>> 
>>> clang++ --version
>>> clang version 5.0.1 (tags/RELEASE_501/final)
>>> Target: x86_64-apple-darwin17.4.0
>>> Thread model: posix
>>> InstalledDir: /usr/local/opt/llvm/bin
>>> 
>>> or
>>> 
>>> clang++ --version
>>> Apple LLVM version 9.0.0 (clang-900.0.39.2)
>>> Target: x86_64-apple-darwin17.4.0
>>> Thread model: posix
>>> InstalledDir: 
>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
>>> 
>>> Do you have some idea about what's happened and how to solve this problem ?
>>> 
>>> Thanks
>>> 
>>> Marc
>>> 
>>> _
>>> 
>>> Information on my R version:
>>> 
 R.Version()
>>> $platform
>>> [1] "x86_64-apple-darwin15.6.0"
>>> 
>>> $arch
>>> [1] "x86_64"
>>> 
>>> $os
>>> [1] "darwin15.6.0"
>>> 
>>> $system
>>> [1] "x86_64, darwin15.6.0"
>>> 
>>> $status
>>> [1] "Under development (unstable)"
>>> 
>>> $major
>>> [1] "3"
>>> 
>>> $minor
>>> [1] "5.0"
>>> 
>>> $year
>>> [1] "2018"
>>> 
>>> $month
>>> [1] "02"
>>> 
>>> $day
>>> [1] "13"
>>> 
>>> $`svn rev`
>>> [1] "74247"
>>> 
>>> $language
>>> [1] "R"
>>> 
>>> $version.string
>>> [1] "R Under development (unstable) (2018-02-13 r74247)"
>>> 
>>> $nickname
>>> [1] "Unsuffered Consequences"
>>> 
>>> ___
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac@r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>> ___
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org 
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac 
>> 
> 
> 
> -- 
> Brian D. Ripley,  rip...@stats.ox.ac.uk 
> 
> Emeritus Professor of Applied Statistics, University of Oxford
> 
> ___
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org 
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac 
> 

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Re: [R-SIG-Mac] Update of RcppParallel failed

2018-02-14 Thread Prof Brian Ripley 

On 14/02/2018 14:01, Keith O'Hara wrote:

This looks like an issue to bring up with the Rcpp guys, not R… but can you 
provide a full printout of the error? I’m guessing this failed when compiling a 
C file, not C++.


RcppParalllel is not part of Rcpp, and orphaned.  It seems to be a 
mac-specific issue (it is not happening on other platforms with clang).


There is a bug in src/Makevars.  The line

PKG_CPPFLAGS += $(CXX1XSTD) -I../inst/include/

should refer to PKG_CXXFLAGS.  I'll fix that after testing as version 
4.3.20.2.






On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac 
 wrote:

This morning I had an update to apply for RcppParallel but it failed

Here are some information:


update.packages()

RcppParallel :
  Version 4.3.20 installed in 
/Library/Frameworks/R.framework/Versions/3.5/Resources/library
  Version 4.3.20.1 available at https://cran.r-project.org

During instal, I had this error

error: invalid argument '-std=gnu++11' not allowed with 'C'

It failed with the two versions of clang that I have installed:

clang++ --version
clang version 5.0.1 (tags/RELEASE_501/final)
Target: x86_64-apple-darwin17.4.0
Thread model: posix
InstalledDir: /usr/local/opt/llvm/bin

or

clang++ --version
Apple LLVM version 9.0.0 (clang-900.0.39.2)
Target: x86_64-apple-darwin17.4.0
Thread model: posix
InstalledDir: 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin

Do you have some idea about what's happened and how to solve this problem ?

Thanks

Marc

_

Information on my R version:


R.Version()

$platform
[1] "x86_64-apple-darwin15.6.0"

$arch
[1] "x86_64"

$os
[1] "darwin15.6.0"

$system
[1] "x86_64, darwin15.6.0"

$status
[1] "Under development (unstable)"

$major
[1] "3"

$minor
[1] "5.0"

$year
[1] "2018"

$month
[1] "02"

$day
[1] "13"

$`svn rev`
[1] "74247"

$language
[1] "R"

$version.string
[1] "R Under development (unstable) (2018-02-13 r74247)"

$nickname
[1] "Unsuffered Consequences"

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--
Brian D. Ripley,  rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford

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Re: [R-SIG-Mac] Update of RcppParallel failed

2018-02-14 Thread Keith O'Hara 
This looks like an issue to bring up with the Rcpp guys, not R… but can you 
provide a full printout of the error? I’m guessing this failed when compiling a 
C file, not C++.

> On Feb 14, 2018, at 8:43 AM, Marc Girondot via R-SIG-Mac 
>  wrote:
> 
> This morning I had an update to apply for RcppParallel but it failed
> 
> Here are some information:
> 
> > update.packages()
> RcppParallel :
>  Version 4.3.20 installed in 
> /Library/Frameworks/R.framework/Versions/3.5/Resources/library
>  Version 4.3.20.1 available at https://cran.r-project.org
> 
> During instal, I had this error
> 
> error: invalid argument '-std=gnu++11' not allowed with 'C'
> 
> It failed with the two versions of clang that I have installed:
> 
> clang++ --version
> clang version 5.0.1 (tags/RELEASE_501/final)
> Target: x86_64-apple-darwin17.4.0
> Thread model: posix
> InstalledDir: /usr/local/opt/llvm/bin
> 
> or
> 
> clang++ --version
> Apple LLVM version 9.0.0 (clang-900.0.39.2)
> Target: x86_64-apple-darwin17.4.0
> Thread model: posix
> InstalledDir: 
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
> 
> Do you have some idea about what's happened and how to solve this problem ?
> 
> Thanks
> 
> Marc
> 
> _
> 
> Information on my R version:
> 
> > R.Version()
> $platform
> [1] "x86_64-apple-darwin15.6.0"
> 
> $arch
> [1] "x86_64"
> 
> $os
> [1] "darwin15.6.0"
> 
> $system
> [1] "x86_64, darwin15.6.0"
> 
> $status
> [1] "Under development (unstable)"
> 
> $major
> [1] "3"
> 
> $minor
> [1] "5.0"
> 
> $year
> [1] "2018"
> 
> $month
> [1] "02"
> 
> $day
> [1] "13"
> 
> $`svn rev`
> [1] "74247"
> 
> $language
> [1] "R"
> 
> $version.string
> [1] "R Under development (unstable) (2018-02-13 r74247)"
> 
> $nickname
> [1] "Unsuffered Consequences"
> 
> ___
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac

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[R-SIG-Mac] Update of RcppParallel failed

2018-02-14 Thread Marc Girondot via R-SIG-Mac 

This morning I had an update to apply for RcppParallel but it failed

Here are some information:

> update.packages()
RcppParallel :
 Version 4.3.20 installed in 
/Library/Frameworks/R.framework/Versions/3.5/Resources/library

 Version 4.3.20.1 available at https://cran.r-project.org

During instal, I had this error

error: invalid argument '-std=gnu++11' not allowed with 'C'

It failed with the two versions of clang that I have installed:

clang++ --version
clang version 5.0.1 (tags/RELEASE_501/final)
Target: x86_64-apple-darwin17.4.0
Thread model: posix
InstalledDir: /usr/local/opt/llvm/bin

or

clang++ --version
Apple LLVM version 9.0.0 (clang-900.0.39.2)
Target: x86_64-apple-darwin17.4.0
Thread model: posix
InstalledDir: 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin


Do you have some idea about what's happened and how to solve this problem ?

Thanks

Marc

_

Information on my R version:

> R.Version()
$platform
[1] "x86_64-apple-darwin15.6.0"

$arch
[1] "x86_64"

$os
[1] "darwin15.6.0"

$system
[1] "x86_64, darwin15.6.0"

$status
[1] "Under development (unstable)"

$major
[1] "3"

$minor
[1] "5.0"

$year
[1] "2018"

$month
[1] "02"

$day
[1] "13"

$`svn rev`
[1] "74247"

$language
[1] "R"

$version.string
[1] "R Under development (unstable) (2018-02-13 r74247)"

$nickname
[1] "Unsuffered Consequences"

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