Re: [R-sig-phylo] Standardising independent contrasts

2009-09-16 Thread Liam J. Revell
Ted Garland made the very good point to me that "positivization" is not the same as taking the absolute value of contrasts when several traits are being considered. If, for example, one is inclined to positivize the contrasts for two traits with respect to trait x, then a pair of contrasts (x,

Re: [R-sig-phylo] Standardising independent contrasts

2009-09-16 Thread Liam J. Revell
Hi Manabu, Yes, "positivized" is the same as taking the absolute value. For some of Garland et al.'s diagnostic tests on contrasts you might need the "expected variances" of the contrasts (actually, proportional to their expected variance prior to standardization), or the unstandardized contr