Hi John,
John Denton wrote on 31/01/2011 01:30:
Hi folks,
I'm starting to use APE, and am trying to write a script to iteratively
prune taxa from an alignment / tree combination and print the reduced
datasets to separate files.
I was thinking of using some combination of drop.tip + DNAbin, but
Florian-
Doesn't white noise have two parameters, mean and variance, and thus is just
as complex as the Brownian Motion model? I guess LRT could be done against
both.
That said, it isn't clear to me that what it means for the White Noise to
fit best, as WN is interpretable as an evolutionary scena
Hi folks,
I'm starting to use APE, and am trying to write a script to iteratively
prune taxa from an alignment / tree combination and print the reduced
datasets to separate files.
I was thinking of using some combination of drop.tip + DNAbin, but I am
unsure of how to link removing the tip labels