Maybe
methods(class=class(myobjetc))
for example:
library(ape)
data(bird.families)
class(bird.families)
[1] phylo
methods(class=class(bird.families))
[1] +.phyloall.equal.phylo
[3] as.hclust.phyloas.matching.phylo
[5] c.phylo
Hi All,
I have a frequentist test statistic (mean phylogenetic distance (MPD)
calculated using picante) that I want to calculate while accounting (as best
as I can!) for phylogenetic uncertainty. The test involves calculating a p
value by first calculating the observed MPD between a particular
Hello all,
Apologies for sending another post this week, but I've run into a
strange error with bind.tree(), as below. I'm binding one tree
(clade) to a tip (4, in this case) on another tree (chosen_tree).
chosen_tree is a tree from an allTrees() output.
bind.tree(chosen_tree,clade,where=tip)
Hi David,
have you checked the ordering of the trees? allTrees returns trees in
''pruningwise ordering. Different functions assume different things
how this should look like, but often don't say it explicitely. Things
like reorder from ape or phangorn:::reorderPruning (a bit faster) are
