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PHYLOINFORMATICS SUMMER OF CODE 2011
http://informatics.nescent.org/wiki/Phyloinformatics_Summer_of_Code_2011
If I am not mistaken,
Dan's and Liam's emails seem to describe how maximum values of Pagel's
lambda can be calculated for each phylogeny. In ultrametric trees,
maximum lambda would correspond to
max(covariance in phylogeny)/variance
For instance, if a phylogeny has a variance of 100 and the m
Hi Mark, Brian and others,
Mark Holder wrote on 25/03/2011 23:12:
Hi all,
Adding a command skipping feature to ape, might make it a good bit
more robust to some of the weird files that are out there. I'm afraid
that I'm not familiar enough with the code to suggest where those
changes should go.
David,
Your example works correctly for me. A bug was fixed in prop.part() in
ape 2.7 but this apparently affected some unrooted trees, while your
trees are clearly rooted.
Best,
Emmanuel
David Bapst wrote on 26/03/2011 04:32:
Hello all,
I was using prop.part() to identify nodes shared bet
