Hi Nicholas.
The nodes in a "phylo" object are numbered 1:tree$Nnode+N, where N is
the number of tips in the tree & tree$Nnode is the number of nodes. That
means if your tree has 10 tips and 9 internal nodes, the node numbers
will be 11, 12, 13, ..., 19.
To use nodelabels(...,pie=XX) you can
Hi,
Hoe does the function "nodelabels" match data to the phylogeny? Ancestral
reconstruction produces a vector with a sample output:
> st
[,1] [,2][,3] [,4][,5]
[1,] 0.0001381085 0.007642601 0.01638118 0.001591162 0.001268793
[2,] 0.9998618915 0.992357399
