Yes, this has come up in my reading…but there do seem to be situations where
’nearly neutral’ substitutions can be negatively or positively associated with
population size:
From Lanfear 2014 Population size and the rate of evolution:
"Putting aside variation in the mutation rate, we largely
Hi Jacob,
You might want to check Joseph Heled's python package biopy
(https://code.google.com/p/biopy), I know it has some simulation capabilities.
Also check Z. Yang's program MCMCcoal, I know some people have used it for
simulation analyses in BPP.
Cheers,
Santiago
Sent from my iPhone
