Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo

Thank you so very much for helping me with this! This is the perfect solution. Kamila > On Jul 1, 2016, at 3:37 AM, Emmanuel Paradis wrote: > > Hi Kamila, > > The vectors x and y extracted by Liam are ordered in the same way than the > tip labels of the tree (say its

[R-sig-phylo] Reconstruction of ancestral character state with no organ

Dear All, I am working on reconstruction of ancestral character state with a trait of three states (0,1, 2) of a specific organ from 100 taxa. Per tutorials on http://blog.phytools.org/2015/09/primer-on-estimating-ancestral-states.html and

Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo

There is a small bug actually: label.offset is ignored with type = "unrooted" (unless lab4ut = "axial"). This is now fixed. Best, Emmanuel Le 01/07/2016 09:37, Emmanuel Paradis a écrit : Hi Kamila, The vectors x and y extracted by Liam are ordered in the same way than the tip labels of the

Re: [R-sig-phylo] Adjust position of tip labels in plot.phylo

Hi Kamila, The vectors x and y extracted by Liam are ordered in the same way than the tip labels of the tree (say its names is 'phy'); for instance, the followings should do the same output than plot(phy): plot(phy, show.tip.label = FALSE) obj <- get("last_plot.phylo", envir = .PlotPhyloEnv)