Dears,
I removed ape 4.1 and install 4.0 version and the problem with my tree is
gone. I can extract clade even my tree having singletons. But the problem
still occur in example tree, with new error message. With this tree:
A_1,A_2,)A,(B1,B2,B3)B)C,D1))),(E1,E2)E)D),(F1)F)R;
or
(A_1
Dear Eliot,
Thank you for your answer! My tree is ok, but to plot is needed to collapse
singles, as you said.
I use ape/phytools to manipulate my tree for date it after with phylocom.
Then, all node is important, including single one. For this, collapse
singletons do not work for me. For instance
Dear Klaus,
Thank you for your answer and good news that ape/phangorn will load tree
with singletons! Can I send the tree to your email?
My problem with collapse.singles is, for instance, when I have only one
genus/specie. I want the node name with genus and a tip name with species.
When I collap
Your Newick string is badly formatted. See:
plot(t1)
Error in plot.phylo(t1) :
there are single (non-splitting) nodes in your tree; you may need to use
collapse.singles()
On Thu, Jun 1, 2017 at 1:31 AM, Mario José Marques-Azevedo <
mariojm...@gmail.com> wrote:
> Dears,
>
> I'm using extract.c
