Re: [R-sig-phylo] Error in phytools - locate.fossil?

2023-01-11 Thread Lindsey Dehaan
Great! Thanks for all the help! Lindsey On Wed, Jan 11, 2023 at 9:33 AM Liam J. Revell wrote: > Dear Lindsey. > > You should not adjust tol at all -- use the default. Sorry I wasn't clear > on that. It is just an (arbitrarily) small value that helps us avoid > evaluating solutions that are not

Re: [R-sig-phylo] Error in phytools - locate.fossil?

2023-01-11 Thread Liam J. Revell
Dear Lindsey. You should not adjust tol at all -- use the default. Sorry I wasn't clear on that. It is just an (arbitrarily) small value that helps us avoid evaluating solutions that are not "legal." (E.g., in your case, trying to attach a tip to an edge /below/ its parent node.) All the

Re: [R-sig-phylo] Error in phytools - locate.fossil?

2023-01-11 Thread Lindsey Dehaan
Hey Liam, Thanks alot! I really appreciate it! I installed the new version and I saw your edits to the locate.fossil function on github. I just have one more question, I am new to the tol argument and I am not sure what the default should be set to. I've set it to a couple numbers (ex, 0.5, 0.1