Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state

Thanks, Liam! It worked perfectly. -Rafa *--* *Rafael S. Marcondes, Ph.D.* *https://www.rafaelmarcondes.com/ * Faculty Fellow in EEB Department of BioSciences Rice University Houston TX 77005 Pronouns: he/him *"Eu quase que nada não sei. Mas desconfio de muita

Re: [R-sig-phylo] Using results of make.simmap to color edges by most likely state

Dear Rafa & list. Here is a solution: http://blog.phytools.org/2023/04/coloring-edges-of-plotted-tree-by.html. I applied it to marginal ancestral states obtained using the new /phytools/ method /ancr/, but the same principle could be used with a summary of stochastic maps. I will make a subseq

[R-sig-phylo] Using results of make.simmap to color edges by most likely state

Hi all, I would like to use the results of make.simmap to plot the edges of a tree by their most likely state. (Because my tree is really large and plotting pie charts at the nodes gets really polluted.) So first I took $ace from the results to describe.simmap and added a column for the most like