Re: [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees

2015-12-21 Thread Mark Holder
/- > Ross Mounce, PhD > Dept. of Plant Sciences, University of Cambridge > www.rossmounce.co.uk > > ___ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.ma

Re: [R-sig-phylo] Fwd: Fwd: phyloxml

2014-03-07 Thread Mark Holder
version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Mark Holder mthol...@gmail.com mthol...@ku.edu

Re: [R-sig-phylo] combining p-values in PCMs

2013-04-02 Thread Mark Holder
form of parametric bootstrapping. You may also be interested in: Demortier, Luc. P-values and nuisance parameters. Proceedings of PHYSTAT 2007 (2007): 23-33. all the best, Mark -- Mark Holder mthol...@gmail.com mthol...@ku.edu http://phylo.bio.ku.edu/mark-holder

Re: [R-sig-phylo] asymmetric transitions

2012-08-17 Thread Mark Holder
between these view points, and so its a matter of personal choice which interpretation/model is used. Cheers, Jarrod Quoting Mark Holder mthol...@ku.edu on Thu, 16 Aug 2012 23:41:45 -0500: Hi, I agree that model testing between ARD vs MK models is going to be misleading

Re: [R-sig-phylo] asymmetric transitions

2012-08-16 Thread Mark Holder
]] ___ R-sig-phylo mailing list R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Mark Holder mthol...@ku.edu http://phylo.bio.ku.edu/mark-holder == Department of Ecology and Evolutionary Biology

Re: [R-sig-phylo] asymmetric transitions

2012-08-16 Thread Mark Holder
your observation of an excess of large LRT statistics. those are my 2 cents. all the best, Mark _ Dan Rabosky Assistant Professor Dept of Ecology and Evolutionary Biology Museum of Zoology University of Michigan drabo...@umich.edu Mark Holder mthol